Variant report

Variant	rs28684436
Chromosome Location	chr7:101523540-101523541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101498337..101501092-chr7:101523360..101525337,2	K562	blood:
2	chr7:101523069..101525610-chr7:101617549..101619285,2	MCF-7	breast:
3	chr7:101522402..101527695-chr7:101541882..101547914,5	MCF-7	breast:
4	chr7:101513234..101515852-chr7:101521619..101524007,2	MCF-7	breast:
5	chr7:101512083..101520283-chr7:101521327..101527237,12	K562	blood:
6	chr7:101512988..101516254-chr7:101522807..101526538,9	MCF-7	breast:
7	chr10:5588202..5590843-chr7:101522769..101524342,2	MCF-7	breast:
8	chr7:101498337..101502406-chr7:101523360..101525757,3	K562	blood:
9	chr7:101504130..101506941-chr7:101522541..101527065,4	K562	blood:

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10271702	1.00[AMR][1000 genomes]
rs73712544	1.00[AMR][1000 genomes]
rs7790481	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101501000-101523600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:101501000-101525000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:101511800-101523600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:101512200-101524000	Weak transcription	NHLF	lung
5	chr7:101513200-101523600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr7:101513600-101525200	Weak transcription	Spleen	Spleen
7	chr7:101514200-101523800	Weak transcription	Fetal Kidney	kidney
8	chr7:101514400-101527400	Weak transcription	GM12878-XiMat	blood
9	chr7:101514600-101524000	Weak transcription	Fetal Stomach	stomach
10	chr7:101514800-101523600	Weak transcription	NHEK	skin
11	chr7:101514800-101525200	Weak transcription	Esophagus	oesophagus
12	chr7:101514800-101525400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:101517600-101524000	Weak transcription	Osteobl	bone
14	chr7:101518000-101524000	Weak transcription	NHDF-Ad	bronchial
15	chr7:101518200-101524000	Weak transcription	Primary B cells from cord blood	blood
16	chr7:101518400-101523600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:101518400-101523600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:101518400-101526000	Weak transcription	Dnd41	blood
19	chr7:101518800-101523600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:101518800-101523800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:101518800-101524000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:101519000-101523600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:101519000-101523600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr7:101519000-101524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:101519000-101525800	Weak transcription	Brain Anterior Caudate	brain
26	chr7:101519000-101525800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:101519000-101525800	Weak transcription	Ovary	ovary
28	chr7:101519200-101523600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:101519400-101525600	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:101519400-101525800	Weak transcription	Brain Angular Gyrus	brain
31	chr7:101519800-101523600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr7:101520200-101524600	Enhancers	A549	lung
33	chr7:101521200-101523800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr7:101521200-101524800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr7:101521200-101526000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:101521200-101526200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr7:101521200-101526400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:101521200-101526400	Enhancers	Left Ventricle	heart
39	chr7:101521200-101526600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:101521200-101526800	Enhancers	Fetal Intestine Large	intestine
41	chr7:101521200-101527000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:101521200-101527600	Enhancers	Placenta	Placenta
43	chr7:101521200-101528800	Enhancers	Fetal Heart	heart
44	chr7:101521400-101526000	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr7:101521600-101523600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:101521600-101523600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr7:101521600-101527600	Weak transcription	Gastric	stomach
48	chr7:101521800-101523600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:101521800-101523600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:101521800-101524000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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