Variant report

Variant	rs2868455
Chromosome Location	chr3:146404095-146404096
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1119889	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1119890	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1511554	0.80[AMR][1000 genomes]
rs1912784	0.84[EUR][1000 genomes]
rs1912785	0.85[EUR][1000 genomes]
rs1912787	0.80[AMR][1000 genomes]
rs2868456	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4681123	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4681334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6796901	0.80[AMR][1000 genomes]
rs6797350	0.80[AMR][1000 genomes]
rs7624984	0.80[AMR][1000 genomes]
rs9819519	0.86[EUR][1000 genomes]
rs9852132	0.80[AMR][1000 genomes]
rs986170	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs986171	0.84[EUR][1000 genomes]
rs986172	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146398400-146404200	Enhancers	Dnd41	blood
2	chr3:146403800-146410000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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