Variant report

Variant	rs28685134
Chromosome Location	chr4:91872072-91872073
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91871450..91872421-chr4:91953829..91954477,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11097285	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34473363	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv594834	chr4:91866171-91872431	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91871000-91872200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:91871000-91872200	Enhancers	Fetal Intestine Large	intestine
3	chr4:91871000-91872200	Enhancers	Fetal Intestine Small	intestine
4	chr4:91871400-91872600	Flanking Active TSS	HUVEC	blood vessel
5	chr4:91871600-91872200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:91871600-91872200	Enhancers	Duodenum Mucosa	Duodenum
7	chr4:91871600-91872200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr4:91871600-91872200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr4:91871600-91872400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:91871600-91872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:91871600-91872600	Enhancers	NHEK	skin
12	chr4:91871800-91872600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:91871800-91872600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:91871800-91872600	Active TSS	A549	lung
15	chr4:91871800-91872600	Enhancers	NH-A	brain
16	chr4:91871800-91872800	Enhancers	HMEC	breast
17	chr4:91871800-91879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:91872000-91872200	Enhancers	Colon Smooth Muscle	Colon
19	chr4:91872000-91872600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr4:91872000-91872600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:91872000-91872800	Weak transcription	Fetal Lung	lung
22	chr4:91872000-91873200	Enhancers	Hela-S3	cervix
23	chr4:91872000-91879600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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