Variant report

Variant	rs28686841
Chromosome Location	chr14:20788432-20788433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:20784055-20788798	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr14:20788411-20788521	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr14:20788412-20788555	K562	blood:	n/a	n/a
4	POLR2A	chr14:20787219-20788700	K562	blood:	n/a	n/a
5	POLR2A	chr14:20787545-20788532	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:20786919..20788985-chr14:20810151..20813024,2	MCF-7	breast:
2	chr14:20786888..20790712-chr14:20796897..20800765,3	K562	blood:
3	chr14:20787923..20789445-chr14:20794092..20796187,2	K562	blood:
4	chr14:20788029..20790732-chr14:20793984..20796288,4	MCF-7	breast:
5	chr14:20787309..20789953-chr14:20789984..20791962,2	MCF-7	breast:

No data

Variant related genes	Relation type
CCNB1IP1	TF binding region
ENSG00000129484	Chromatin interaction
ENSG00000222489	Chromatin interaction
ENSG00000100814	Chromatin interaction
ENSG00000259001	Chromatin interaction
ENSG00000238344	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10133899	0.97[AFR][1000 genomes]
rs10151004	0.90[AFR][1000 genomes]
rs3093913	0.84[AFR][1000 genomes]
rs57448907	0.89[AFR][1000 genomes]
rs59183141	0.90[AFR][1000 genomes]
rs59715283	0.83[AFR][1000 genomes]
rs73583478	1.00[AFR][1000 genomes]
rs73583498	1.00[AFR][1000 genomes]
rs73583499	0.97[AFR][1000 genomes]
rs73585107	0.84[AFR][1000 genomes]
rs73585109	0.83[AFR][1000 genomes]
rs73585121	0.89[AFR][1000 genomes]
rs73585147	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
4	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
5	esv1806993	chr14:20743269-20841162	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv534131	chr14:20757405-20886235	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1042025	chr14:20787961-20817851	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20774200-20795400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:20774200-20795600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:20774200-20795600	Weak transcription	Fetal Heart	heart
4	chr14:20774200-20800400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:20774200-20800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:20774200-20800400	Weak transcription	Fetal Brain Male	brain
7	chr14:20774200-20800400	Weak transcription	Stomach Mucosa	stomach
8	chr14:20774200-20800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:20774200-20800800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:20774200-20800800	Weak transcription	Small Intestine	intestine
11	chr14:20778800-20798600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:20779000-20795600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:20779400-20788600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:20779400-20788800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr14:20779400-20788800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:20779400-20790200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:20779400-20794000	Strong transcription	Left Ventricle	heart
18	chr14:20779400-20794200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:20779400-20794800	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr14:20779400-20794800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:20779400-20795000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:20779400-20795000	Strong transcription	Osteobl	bone
23	chr14:20779400-20795200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:20779400-20795200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:20779400-20795400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:20779400-20797000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:20779400-20797200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:20779400-20797800	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr14:20779400-20798000	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:20779400-20799000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:20779600-20788600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr14:20779600-20788600	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr14:20779600-20788600	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:20779600-20788600	Strong transcription	HSMM	muscle
35	chr14:20779600-20788800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr14:20779600-20788800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr14:20779600-20788800	Strong transcription	Adipose Nuclei	Adipose
38	chr14:20779600-20789000	Strong transcription	Fetal Muscle Leg	muscle
39	chr14:20779600-20789400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr14:20779600-20789800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:20779600-20790800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr14:20779600-20793000	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr14:20779600-20793200	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:20779600-20794800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:20779600-20794800	Strong transcription	HepG2	liver
46	chr14:20779600-20795000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:20779600-20795000	Strong transcription	Liver	Liver
48	chr14:20779600-20795000	Strong transcription	Dnd41	blood
49	chr14:20779600-20795200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:20779600-20795400	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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