Variant report

Variant	rs28687238
Chromosome Location	chr4:96292671-96292672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10024121	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10516964	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1384868	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1586163	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17023543	0.82[EUR][1000 genomes]
rs17023545	0.82[EUR][1000 genomes]
rs17023644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28621043	0.82[EUR][1000 genomes]
rs2865447	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66969062	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7687905	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
3	chr4:96285600-96293200	Weak transcription	Fetal Heart	heart
4	chr4:96285800-96295400	Weak transcription	Fetal Kidney	kidney
5	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:96290600-96293000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:96291600-96292800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:96291600-96293400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:96291600-96293400	Enhancers	Brain Angular Gyrus	brain
10	chr4:96291600-96293600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:96291600-96293600	Enhancers	Brain Anterior Caudate	brain
12	chr4:96291600-96293600	Enhancers	Brain Hippocampus Middle	brain
13	chr4:96291600-96293600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr4:96291600-96294200	Enhancers	Brain Substantia Nigra	brain
15	chr4:96291600-96294800	Enhancers	Brain Cingulate Gyrus	brain
16	chr4:96291800-96293400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:96292000-96293000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:96292000-96295600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:96292400-96293400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:96292400-96293400	Enhancers	Fetal Lung	lung
21	chr4:96292600-96293000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:96292600-96293400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:96292600-96293400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr4:96292600-96293400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr4:96292600-96293400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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