Variant report

Variant	rs28692568
Chromosome Location	chr14:77936455-77936456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:77887631..77890364-chr14:77936303..77938183,2	MCF-7	breast:
2	chr14:77922040..77925665-chr14:77935403..77938131,3	MCF-7	breast:
3	chr14:77935817..77939399-chr14:77941876..77944072,3	MCF-7	breast:
4	chr14:77921860..77928400-chr14:77931824..77937732,8	MCF-7	breast:
5	chr14:77935677..77938460-chr14:78087456..78089168,2	MCF-7	breast:
6	chr14:77934807..77937271-chr14:78175752..78177718,2	K562	blood:
7	chr14:77935395..77937694-chr14:77986680..77989450,2	K562	blood:
8	chr14:77936196..77939744-chr14:77940216..77943828,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151445	Chromatin interaction
ENSG00000119705	Chromatin interaction
ENSG00000100591	Chromatin interaction
ENSG00000165555	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17105824	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17751424	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56235462	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59303810	0.91[AMR][1000 genomes]
rs6574371	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67370165	0.91[AMR][1000 genomes]
rs68114837	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7148765	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041985	chr14:77877421-77936969	Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77925600-77936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:77926000-77936800	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr14:77926000-77936800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr14:77926000-77939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:77926200-77936600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:77926200-77936800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:77926200-77936800	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr14:77926200-77937000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:77926200-77937000	Strong transcription	Fetal Stomach	stomach
10	chr14:77926200-77937000	Strong transcription	Ovary	ovary
11	chr14:77926400-77936600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:77926400-77936600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:77926400-77936600	Strong transcription	Brain Hippocampus Middle	brain
14	chr14:77926400-77936800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:77926400-77936800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:77926400-77936800	Strong transcription	Fetal Muscle Leg	muscle
17	chr14:77926400-77936800	Strong transcription	A549	lung
18	chr14:77926400-77936800	Strong transcription	NH-A	brain
19	chr14:77926400-77937000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:77926400-77937000	Strong transcription	Brain Substantia Nigra	brain
21	chr14:77926400-77937000	Strong transcription	Spleen	Spleen
22	chr14:77926400-77937200	Strong transcription	Primary T cells from cord blood	blood
23	chr14:77926400-77937200	Strong transcription	Liver	Liver
24	chr14:77926600-77936800	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr14:77926600-77937000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:77926800-77936600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:77926800-77936800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:77926800-77937000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr14:77926800-77937000	Strong transcription	Left Ventricle	heart
30	chr14:77930400-77938200	Weak transcription	Fetal Heart	heart
31	chr14:77932200-77937600	Weak transcription	Stomach Mucosa	stomach
32	chr14:77932600-77937200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr14:77932600-77937600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr14:77932800-77938400	Weak transcription	Psoas Muscle	Psoas
35	chr14:77933200-77937000	Weak transcription	K562	blood
36	chr14:77933400-77937200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:77933400-77937600	Weak transcription	Fetal Brain Male	brain
38	chr14:77934600-77936800	Weak transcription	Hela-S3	cervix
39	chr14:77934800-77937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr14:77935200-77936600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:77935600-77937800	Weak transcription	HSMM	muscle
42	chr14:77935800-77936600	Weak transcription	Colonic Mucosa	Colon
43	chr14:77935800-77936800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:77935800-77937000	Weak transcription	Fetal Intestine Small	intestine
45	chr14:77935800-77937400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr14:77935800-77938200	Weak transcription	Small Intestine	intestine
47	chr14:77935800-77938600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr14:77935800-77939000	Weak transcription	HUVEC	blood vessel
49	chr14:77935800-77939200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:77935800-77940400	Weak transcription	NHEK	skin

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