Variant report

Variant	rs28693964
Chromosome Location	chr15:34205480-34205481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28529776	1.00[AMR][1000 genomes]
rs28556761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28647944	1.00[AMR][1000 genomes]
rs60633462	1.00[AMR][1000 genomes]
rs8027494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv977841	chr15:34204739-34224060	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34199600-34220800	Weak transcription	Right Atrium	heart
2	chr15:34201600-34207800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:34201600-34208000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:34202000-34207600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:34203000-34207600	Weak transcription	GM12878-XiMat	blood
6	chr15:34203600-34205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:34203600-34207600	Weak transcription	Hela-S3	cervix
8	chr15:34203600-34207600	Weak transcription	HMEC	breast
9	chr15:34203600-34207600	Weak transcription	NHEK	skin
10	chr15:34203600-34207800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:34203600-34207800	Weak transcription	HSMMtube	muscle
12	chr15:34203800-34207400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:34203800-34207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:34203800-34208000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:34204000-34211800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:34204400-34208000	Weak transcription	A549	lung
17	chr15:34204600-34205600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:34205000-34208000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:34205400-34205800	Enhancers	Osteobl	bone
20	chr15:34205400-34206000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:34205400-34206200	Enhancers	HUVEC	blood vessel

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