Variant report

Variant	rs28694038
Chromosome Location	chr5:107201226-107201227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10040850	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1865015	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6596759	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6869144	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6875566	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6882819	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6891397	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7730156	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107189000-107204000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107189000-107212200	Weak transcription	Fetal Brain Male	brain
3	chr5:107194000-107219000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:107195200-107214800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:107195400-107204800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:107195400-107205000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:107195400-107207600	Weak transcription	Spleen	Spleen
8	chr5:107195400-107208600	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:107195400-107211600	Weak transcription	Aorta	Aorta
10	chr5:107195400-107214200	Weak transcription	Primary B cells from cord blood	blood
11	chr5:107195400-107215000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:107195400-107215000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:107195400-107217800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:107195400-107220000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
16	chr5:107195600-107204600	Weak transcription	Fetal Stomach	stomach
17	chr5:107195800-107214400	Weak transcription	Fetal Intestine Small	intestine
18	chr5:107195800-107218200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:107196000-107204200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:107196000-107210800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:107196400-107202600	Weak transcription	Placenta	Placenta
22	chr5:107196800-107203400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:107196800-107205000	Weak transcription	HSMM	muscle
24	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:107197600-107204200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:107197600-107215400	Weak transcription	Ovary	ovary
27	chr5:107197800-107204800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:107197800-107210400	Weak transcription	Primary T cells from cord blood	blood
29	chr5:107197800-107215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr5:107197800-107215800	Weak transcription	Lung	lung
31	chr5:107197800-107219000	Weak transcription	Gastric	stomach
32	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:107198000-107223000	Weak transcription	Adipose Nuclei	Adipose
34	chr5:107198200-107209200	Weak transcription	Liver	Liver
35	chr5:107198600-107211400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:107200200-107201800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr5:107200200-107201800	Enhancers	Rectal Smooth Muscle	rectum
38	chr5:107200200-107204200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:107200400-107202200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr5:107200400-107203800	Weak transcription	Esophagus	oesophagus
41	chr5:107200400-107204800	Weak transcription	Pancreas	Pancrea
42	chr5:107200600-107201600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr5:107200800-107201400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr5:107200800-107203800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:107201000-107203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:107201000-107204800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr5:107201200-107201400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr5:107201200-107201400	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr5:107201200-107204200	Weak transcription	NHLF	lung
50	chr5:107201200-107204400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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