Variant report

Variant	rs286942
Chromosome Location	chr11:34626691-34626692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34624693..34626791-chr11:34672431..34674013,2	K562	blood:
2	chr11:34620874..34623895-chr11:34625978..34628773,4	K562	blood:
3	chr11:34625607..34627154-chr11:34665407..34666959,2	MCF-7	breast:
4	chr11:34596450..34598657-chr11:34624688..34627095,2	K562	blood:
5	chr11:34624747..34628551-chr11:34657820..34660941,3	K562	blood:
6	chr11:34625710..34627655-chr11:34689345..34691054,2	MCF-7	breast:
7	chr11:34622395..34624050-chr11:34625059..34627992,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs286931	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv526845	chr11:34625239-34632772	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34620600-34628400	Enhancers	Fetal Intestine Small	intestine
3	chr11:34620600-34628600	Enhancers	Fetal Intestine Large	intestine
4	chr11:34622800-34627200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:34623000-34627000	Enhancers	Stomach Mucosa	stomach
6	chr11:34623000-34627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:34623000-34627600	Weak transcription	Esophagus	oesophagus
8	chr11:34623000-34628000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:34623200-34627200	Weak transcription	NHLF	lung
10	chr11:34623400-34628600	Enhancers	A549	lung
11	chr11:34623400-34628600	Enhancers	HepG2	liver
12	chr11:34623400-34631200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:34624200-34633800	Weak transcription	Lung	lung
14	chr11:34624600-34628400	Enhancers	Hela-S3	cervix
15	chr11:34624800-34628200	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:34624800-34630800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:34625200-34628200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:34625400-34628400	Enhancers	K562	blood
19	chr11:34625400-34642800	Weak transcription	Gastric	stomach
20	chr11:34625600-34628400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:34625800-34627000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:34626000-34627200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:34626000-34627800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:34626200-34627800	Enhancers	Pancreas	Pancrea
25	chr11:34626600-34626800	Enhancers	HMEC	breast
26	chr11:34626600-34627000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:34626600-34627000	Weak transcription	NHEK	skin
28	chr11:34626600-34627400	Enhancers	HSMMtube	muscle
29	chr11:34626600-34628400	Enhancers	Small Intestine	intestine

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