Variant report

Variant	rs28696357
Chromosome Location	chr8:87499773-87499774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87493659..87498581-chr8:87498622..87502865,4	MCF-7	breast:
2	chr8:87495268..87498918-chr8:87499043..87502704,4	MCF-7	breast:
3	chr8:87498873..87500941-chr8:87519267..87521705,2	K562	blood:

Variant related genes	Relation type
ENSG00000176623	Chromatin interaction
ENSG00000085719	Chromatin interaction
ENSG00000250569	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41333046	0.82[AMR][1000 genomes]
rs73265765	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv968514	chr8:87495999-87514855	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87441800-87507600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87448800-87502800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:87457400-87507400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:87474000-87517000	Weak transcription	Small Intestine	intestine
5	chr8:87481800-87507400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:87481800-87507600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:87481800-87507600	Weak transcription	Esophagus	oesophagus
8	chr8:87482000-87507600	Weak transcription	Fetal Brain Male	brain
9	chr8:87482000-87508200	Weak transcription	Fetal Heart	heart
10	chr8:87482000-87508400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:87482200-87507600	Weak transcription	Colonic Mucosa	Colon
12	chr8:87482400-87517000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:87482800-87503400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:87482800-87506600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:87482800-87519600	Weak transcription	HUVEC	blood vessel
16	chr8:87483000-87508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:87483200-87505400	Weak transcription	Hela-S3	cervix
18	chr8:87485000-87501200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:87487600-87507400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:87488200-87507400	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:87488200-87507600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:87488400-87519800	Weak transcription	Psoas Muscle	Psoas
23	chr8:87488800-87505400	Weak transcription	Stomach Mucosa	stomach
24	chr8:87490400-87507400	Weak transcription	HSMMtube	muscle
25	chr8:87491200-87507600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr8:87493200-87500200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:87493800-87500200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr8:87493800-87508000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:87494200-87499800	Strong transcription	Liver	Liver
30	chr8:87494200-87500400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:87494200-87519800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:87495200-87506200	Weak transcription	Left Ventricle	heart
33	chr8:87495200-87506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:87495200-87506800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr8:87495200-87506800	Weak transcription	Fetal Brain Female	brain
36	chr8:87495200-87507200	Weak transcription	Pancreas	Pancrea
37	chr8:87495200-87507400	Weak transcription	Aorta	Aorta
38	chr8:87495200-87507600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:87495400-87506400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:87495400-87507400	Weak transcription	Brain Hippocampus Middle	brain
41	chr8:87495600-87507600	Weak transcription	HepG2	liver
42	chr8:87495800-87507600	Weak transcription	K562	blood
43	chr8:87496600-87499800	Strong transcription	Fetal Intestine Small	intestine
44	chr8:87496600-87506600	Weak transcription	Lung	lung
45	chr8:87496600-87507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr8:87496600-87507600	Weak transcription	Brain Substantia Nigra	brain
47	chr8:87496600-87507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr8:87496600-87515800	Weak transcription	NHLF	lung
49	chr8:87496800-87504600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr8:87496800-87505600	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links