Variant report

Variant	rs2869810
Chromosome Location	chr2:56616218-56616219
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10174257	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1030092	0.82[ASN][1000 genomes]
rs11125631	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1157475	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11885335	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13396394	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1465360	0.85[ASN][1000 genomes]
rs1465362	0.85[ASN][1000 genomes]
rs17047946	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2160707	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56969590	0.80[ASN][1000 genomes]
rs57501852	0.82[ASN][1000 genomes]
rs72618680	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7598538	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs956157	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522944	chr2:56603985-56676997	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1806915	chr2:56607397-56633217	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3426994	chr2:56615848-56617796	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56612200-56617200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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