Variant report

Variant	rs28698636
Chromosome Location	chr4:15749589-15749590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10014157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029466	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6852898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15744000-15753800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:15744600-15750800	Weak transcription	Fetal Thymus	thymus
3	chr4:15745800-15750600	Enhancers	Dnd41	blood
4	chr4:15745800-15755000	Weak transcription	Thymus	Thymus
5	chr4:15746400-15753800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:15747600-15755600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:15748400-15755800	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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