Variant report

Variant	rs28699348
Chromosome Location	chr1:84562615-84562616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11803711	1.00[AFR][1000 genomes]
rs11805170	1.00[AFR][1000 genomes]
rs11805237	1.00[AFR][1000 genomes]
rs11811024	1.00[AFR][1000 genomes]
rs12731927	1.00[AFR][1000 genomes]
rs28369405	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv546690	chr1:84562265-84655238	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84545000-84566800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:84545000-84570000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:84545200-84568600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:84545800-84568600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:84552200-84569000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:84555400-84568400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:84556400-84568400	Weak transcription	Brain Angular Gyrus	brain
8	chr1:84556400-84568400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:84556400-84568400	Weak transcription	A549	lung
10	chr1:84556400-84568400	Weak transcription	HSMM	muscle
11	chr1:84556400-84569000	Weak transcription	Left Ventricle	heart
12	chr1:84556600-84566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:84556600-84566600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:84556600-84568600	Weak transcription	Brain Substantia Nigra	brain
15	chr1:84561000-84568600	Weak transcription	Fetal Lung	lung
16	chr1:84562200-84568800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:84562400-84568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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