Variant report

Variant	rs28701638
Chromosome Location	chr22:28624425-28624426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16986177	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28612200-28625600	Weak transcription	Aorta	Aorta
2	chr22:28612200-28634800	Weak transcription	Dnd41	blood
3	chr22:28615800-28626400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr22:28617400-28625400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr22:28617600-28626200	Weak transcription	Psoas Muscle	Psoas
6	chr22:28618400-28626800	Weak transcription	Fetal Kidney	kidney
7	chr22:28618400-28639600	Weak transcription	Ovary	ovary
8	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
9	chr22:28619000-28626000	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:28619200-28626400	Weak transcription	Fetal Lung	lung
11	chr22:28619400-28625600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr22:28619400-28631000	Weak transcription	Brain Hippocampus Middle	brain
13	chr22:28620000-28625200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr22:28620200-28625000	Weak transcription	Osteobl	bone
15	chr22:28620200-28625200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr22:28620200-28625400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:28620400-28625200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr22:28620400-28625200	Weak transcription	NHDF-Ad	bronchial
19	chr22:28620400-28625400	Weak transcription	NHLF	lung
20	chr22:28620400-28625600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr22:28620400-28625600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr22:28620400-28625600	Weak transcription	Fetal Muscle Leg	muscle
23	chr22:28620400-28626000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr22:28620400-28639200	Weak transcription	Left Ventricle	heart

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