Variant report

Variant	rs28702997
Chromosome Location	chr7:101378445-101378446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101375406..101379067-chr7:101385960..101390621,6	MCF-7	breast:
2	chr7:101363858..101366308-chr7:101375999..101378907,2	K562	blood:
3	chr7:101376174..101379277-chr7:101381131..101384556,3	MCF-7	breast:
4	chr7:101376216..101379587-chr7:101455975..101460952,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61497683	1.00[AMR][1000 genomes]
rs73712521	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101364800-101382400	Weak transcription	Thymus	Thymus
2	chr7:101374400-101382800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:101377200-101378600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr7:101377200-101383000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:101377200-101386600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:101377400-101381000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:101377400-101382600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:101377400-101382600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:101377400-101384200	Weak transcription	Colonic Mucosa	Colon
10	chr7:101377800-101378800	Enhancers	Hela-S3	cervix
11	chr7:101377800-101380400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:101377800-101382600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:101377800-101382600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:101377800-101382800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:101377800-101382800	Weak transcription	Stomach Mucosa	stomach
16	chr7:101377800-101382800	Weak transcription	HSMM	muscle
17	chr7:101377800-101382800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:101378000-101382400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:101378000-101382600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:101378000-101383000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:101378000-101383000	Weak transcription	Placenta	Placenta
22	chr7:101378200-101382600	Weak transcription	HepG2	liver
23	chr7:101378400-101379400	Weak transcription	Fetal Thymus	thymus
24	chr7:101378400-101381000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links