Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:52605259..52607900-chr20:55841210..55843045,2	MCF-7	breast:
2	chr17:59952586..59954199-chr20:52607253..52609668,2	MCF-7	breast:
3	chr17:56707710..56709660-chr20:52604740..52608093,5	MCF-7	breast:
4	chr20:52606875..52609499-chr3:64019040..64021624,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485439	1.00[MEX][hapmap]
rs12329598	0.81[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16998695	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16998697	0.87[AMR][1000 genomes]
rs2276493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56254566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6022891	0.89[AMR][1000 genomes]
rs6022893	0.81[ASW][hapmap];0.81[MKK][hapmap]
rs6022903	0.82[ASW][hapmap];0.81[MKK][hapmap]
rs6022909	0.82[ASW][hapmap]
rs60878965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6097708	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6097710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6097712	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6097717	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6097720	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7271177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73914443	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73914470	0.80[AFR][1000 genomes]
rs740373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52566400-52644800	Weak transcription	Gastric	stomach
2	chr20:52581200-52610600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr20:52601400-52612400	Weak transcription	Brain Angular Gyrus	brain
4	chr20:52601400-52612400	Weak transcription	Brain Anterior Caudate	brain
5	chr20:52601800-52609800	Weak transcription	Brain Substantia Nigra	brain
6	chr20:52601800-52612400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr20:52601800-52630800	Weak transcription	Stomach Mucosa	stomach
8	chr20:52602000-52608800	Weak transcription	Fetal Stomach	stomach
9	chr20:52602800-52608800	Weak transcription	HSMMtube	muscle
10	chr20:52602800-52610000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr20:52604400-52618200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr20:52606800-52610600	Weak transcription	Brain Inferior Temporal Lobe	brain

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