Variant report

Variant	rs28703171
Chromosome Location	chr4:94754313-94754314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10006848	0.93[EUR][1000 genomes]
rs10009502	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10015253	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10021588	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10024195	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10024650	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1439554	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1550353	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1550354	0.93[EUR][1000 genomes]
rs17297269	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4693345	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532435	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6810762	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6828743	0.91[EUR][1000 genomes]
rs6836045	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6850864	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7688938	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9284594	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9307129	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9307130	0.85[EUR][1000 genomes]
rs9307131	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9307132	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs992917	0.93[EUR][1000 genomes]
rs992918	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9991641	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9992307	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1792557	chr4:94738158-95027272	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94751400-94755200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:94753400-94755200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
3	chr4:94753600-94755200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr4:94753600-94755400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr4:94753800-94755200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr4:94753800-94755400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr4:94754000-94754600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr4:94754200-94754400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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