Variant report

Variant	rs28703826
Chromosome Location	chr15:72555821-72555822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72522016..72523553-chr15:72554809..72557370,2	K562	blood:
2	chr15:72555189..72557005-chr15:72563474..72566331,2	K562	blood:
3	chr15:72553577..72557068-chr15:72560331..72566356,10	K562	blood:
4	chr15:72522016..72524904-chr15:72553366..72557370,3	K562	blood:
5	chr15:72523926..72525574-chr15:72553644..72556454,2	MCF-7	breast:
6	chr15:72555118..72559591-chr15:72562362..72567008,6	MCF-7	breast:
7	chr15:72548319..72550602-chr15:72554767..72558019,3	K562	blood:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction
ENSG00000137817	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12324257	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396210	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28418777	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483407	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28575504	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667912	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687667	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8192372	1.00[AFR][1000 genomes]
rs9920990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72530400-72563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:72530800-72561200	Strong transcription	Adipose Nuclei	Adipose
3	chr15:72531000-72562400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:72531000-72563000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:72531000-72563000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:72531000-72563400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:72531200-72562800	Strong transcription	Fetal Muscle Leg	muscle
8	chr15:72531800-72561400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr15:72532000-72562600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:72532200-72561000	Strong transcription	Liver	Liver
11	chr15:72532200-72561000	Strong transcription	Fetal Intestine Large	intestine
12	chr15:72532200-72561600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:72532200-72562200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:72532200-72563000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:72532400-72562600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:72532600-72562200	Strong transcription	Brain Anterior Caudate	brain
17	chr15:72532600-72562800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:72532800-72563000	Strong transcription	HSMM	muscle
19	chr15:72533000-72562000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr15:72533200-72562400	Strong transcription	Hela-S3	cervix
21	chr15:72533200-72562600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr15:72536600-72564000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr15:72537200-72564200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:72537600-72563400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:72538600-72561200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:72538800-72562000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:72539000-72562200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:72539200-72556600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:72539200-72562200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:72539400-72561200	Strong transcription	Left Ventricle	heart
31	chr15:72539400-72561600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:72539400-72562600	Strong transcription	Osteobl	bone
33	chr15:72539600-72561200	Strong transcription	Brain Germinal Matrix	brain
34	chr15:72539600-72562800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:72539800-72562800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:72540200-72560000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr15:72540200-72561400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:72540200-72561600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:72540200-72561600	Strong transcription	HSMMtube	muscle
40	chr15:72540200-72562800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:72540200-72563200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:72540400-72556600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:72540400-72560600	Strong transcription	Ovary	ovary
44	chr15:72540400-72561000	Strong transcription	Fetal Lung	lung
45	chr15:72540400-72561600	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr15:72540400-72562800	Strong transcription	A549	lung
47	chr15:72540400-72563400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:72540600-72556600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:72540600-72556600	Strong transcription	HMEC	breast
50	chr15:72540600-72560000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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