Variant report

Variant	rs28705754
Chromosome Location	chr7:21517346-21517347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10235984	0.90[AMR][1000 genomes]
rs10263778	0.86[AMR][1000 genomes]
rs3807644	0.82[AMR][1000 genomes]
rs61244299	0.82[AMR][1000 genomes]
rs6968904	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
2	chr7:21474800-21520600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:21487400-21557000	Weak transcription	Aorta	Aorta
4	chr7:21491000-21526800	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:21491000-21536400	Weak transcription	Left Ventricle	heart
6	chr7:21492200-21545200	Weak transcription	Small Intestine	intestine
7	chr7:21493000-21539000	Weak transcription	Spleen	Spleen
8	chr7:21493800-21529600	Weak transcription	Brain Anterior Caudate	brain
9	chr7:21494400-21517400	Weak transcription	Fetal Kidney	kidney
10	chr7:21495200-21521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:21496000-21519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:21496200-21517800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:21496600-21517600	Weak transcription	Dnd41	blood
14	chr7:21496600-21521600	Weak transcription	Adipose Nuclei	Adipose
15	chr7:21496800-21517600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:21497600-21520800	Weak transcription	HUVEC	blood vessel
17	chr7:21498000-21518800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:21498200-21532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:21498600-21543600	Weak transcription	Pancreas	Pancrea
20	chr7:21500000-21530400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:21500000-21552800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:21500200-21520600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:21500200-21520800	Weak transcription	GM12878-XiMat	blood
24	chr7:21500400-21517400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:21500400-21529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:21500600-21519000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:21501000-21527400	Weak transcription	Fetal Stomach	stomach
28	chr7:21501400-21520200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:21501400-21520600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:21501400-21528800	Weak transcription	Thymus	Thymus
31	chr7:21501400-21531000	Weak transcription	Fetal Intestine Large	intestine
32	chr7:21502200-21521200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr7:21503200-21532400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:21503200-21532400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:21503400-21517400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:21504000-21532800	Weak transcription	Lung	lung
37	chr7:21505600-21536600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:21505800-21527400	Weak transcription	Ovary	ovary
39	chr7:21506200-21529800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr7:21506800-21519200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:21508000-21521000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:21510200-21530200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:21510400-21525400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:21510800-21531800	Weak transcription	Fetal Intestine Small	intestine
45	chr7:21511600-21531800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:21512800-21529800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr7:21513600-21519200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr7:21514000-21536400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:21515400-21524000	Weak transcription	HSMM	muscle
50	chr7:21515400-21526400	Weak transcription	HepG2	liver

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