Variant report

Variant	rs28706352
Chromosome Location	chr4:124737092-124737093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10009328	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024439	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028801	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007438	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007477	0.87[EUR][1000 genomes]
rs17491036	0.85[EUR][1000 genomes]
rs28459060	1.00[ASN][1000 genomes]
rs28530617	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610304	1.00[ASN][1000 genomes]
rs41375145	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66477141	0.87[EUR][1000 genomes]
rs6819215	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991444	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991633	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2754745	chr4:124698055-124770865	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124731600-124741000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:124733400-124737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:124733400-124737600	Weak transcription	NHLF	lung
4	chr4:124733600-124737400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:124733600-124737400	Weak transcription	NHDF-Ad	bronchial
6	chr4:124733600-124737800	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:124733600-124737800	Weak transcription	HSMMtube	muscle
8	chr4:124733600-124738200	Weak transcription	Primary B cells from cord blood	blood
9	chr4:124733600-124738200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:124733800-124737400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:124733800-124738200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:124735200-124753800	Weak transcription	Psoas Muscle	Psoas
13	chr4:124735600-124737400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:124736600-124737400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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