Variant report

Variant	rs2870700
Chromosome Location	chr4:94280305-94280306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10516920	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1433661	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17020487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020516	0.83[AMR][1000 genomes]
rs2099382	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34534000	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72668706	0.83[AFR][1000 genomes]
rs72668713	0.83[AFR][1000 genomes]
rs72668715	0.83[AFR][1000 genomes]
rs72668716	0.83[AFR][1000 genomes]
rs72668718	0.83[AFR][1000 genomes]
rs72668721	0.83[AFR][1000 genomes]
rs72668735	0.83[AFR][1000 genomes]
rs72668736	0.83[AFR][1000 genomes]
rs72668737	0.83[AFR][1000 genomes]
rs72668740	0.83[AFR][1000 genomes]
rs72668741	0.83[AFR][1000 genomes]
rs72668743	0.83[AFR][1000 genomes]
rs72668746	0.83[AFR][1000 genomes]
rs72668747	0.83[AFR][1000 genomes]
rs72668750	0.83[AFR][1000 genomes]
rs72668753	0.83[AFR][1000 genomes]
rs72668756	0.83[AFR][1000 genomes]
rs72668757	0.83[AFR][1000 genomes]
rs72668767	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2830401	chr4:94141655-94450106	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3584808	chr4:94156602-94559327	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv879616	chr4:94190621-94289256	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv533846	chr4:94264488-94462921	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94277200-94280400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94280000-94281000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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