Variant report

Variant	rs28707116
Chromosome Location	chr4:8517337-8517338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10009196	1.00[AMR][1000 genomes]
rs10011431	1.00[AMR][1000 genomes]
rs10019143	1.00[AMR][1000 genomes]
rs10022276	1.00[AMR][1000 genomes]
rs13434523	1.00[AMR][1000 genomes]
rs28416714	1.00[AMR][1000 genomes]
rs28527486	1.00[AMR][1000 genomes]
rs28591490	1.00[AMR][1000 genomes]
rs28609497	1.00[AMR][1000 genomes]
rs28621881	1.00[AMR][1000 genomes]
rs28647609	1.00[AMR][1000 genomes]
rs28839770	1.00[AMR][1000 genomes]
rs28860567	1.00[AMR][1000 genomes]
rs28877981	1.00[AMR][1000 genomes]
rs7695149	1.00[AMR][1000 genomes]
rs9884532	1.00[AMR][1000 genomes]
rs9985915	1.00[AMR][1000 genomes]
rs9985917	1.00[AMR][1000 genomes]
rs9986108	1.00[AMR][1000 genomes]
rs9992927	1.00[AMR][1000 genomes]
rs9997393	1.00[AMR][1000 genomes]
rs9997800	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8509000-8519200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:8511800-8517800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:8512200-8519200	Weak transcription	Spleen	Spleen
4	chr4:8514200-8520200	Enhancers	HSMMtube	muscle
5	chr4:8514600-8520000	Enhancers	Placenta	Placenta
6	chr4:8515600-8520400	Enhancers	NHDF-Ad	bronchial
7	chr4:8516200-8517400	Enhancers	HSMM	muscle
8	chr4:8516400-8518800	Enhancers	Fetal Muscle Trunk	muscle
9	chr4:8516400-8520200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:8516600-8520200	Enhancers	Fetal Muscle Leg	muscle
11	chr4:8516800-8517800	Enhancers	Osteobl	bone
12	chr4:8516800-8518200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:8516800-8520000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:8517000-8519000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:8517200-8517400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:8517200-8517400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:8517200-8518000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:8517200-8518200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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