Variant report

Variant	rs28707248
Chromosome Location	chr14:105487997-105487998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr14:105487756-105488005	GM12878	blood:	n/a	n/a
2	POLR2A	chr14:105486591-105488518	GM19099	blood:	n/a	n/a
3	MXI1	chr14:105487234-105488446	Hela-S3	cervix:	n/a	chr14:105487771-105487780 chr14:105487769-105487778
4	RELA	chr14:105486648-105488390	GM15510	blood:	n/a	chr14:105486805-105486814 chr14:105486805-105486814
5	POLR2A	chr14:105487177-105488389	HCT-116	colon:	n/a	n/a
6	POLR2A	chr14:105486608-105488458	A549	lung:	n/a	n/a
7	POLR2A	chr14:105487165-105488608	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr14:105486771-105488361	GM10847	blood:	n/a	n/a
9	USF1	chr14:105487498-105488112	A549	lung:	n/a	chr14:105488088-105488104
10	USF2	chr14:105487402-105488357	GM12878	blood:	n/a	chr14:105488088-105488104
11	MAZ	chr14:105486565-105488339	GM12878	blood:	n/a	chr14:105487772-105487781 chr14:105487761-105487777 chr14:105488011-105488018 chr14:105487769-105487779 chr14:105488235-105488244 chr14:105487768-105487777 chr14:105487029-105487038 chr14:105488007-105488020
12	POLR2A	chr14:105487037-105488245	ProgFib	skin:	n/a	n/a
13	YY1	chr14:105487720-105488397	A549	lung:	n/a	chr14:105487756-105487770
14	E2F6	chr14:105487226-105488510	H1-hESC	embryonic stem cell:	n/a	chr14:105487754-105487763 chr14:105487505-105487514 chr14:105487576-105487588 chr14:105487525-105487534 chr14:105487553-105487562
15	TAF1	chr14:105487668-105488373	Hela-S3	cervix:	n/a	n/a
16	GTF2F1	chr14:105487712-105488485	Hela-S3	cervix:	n/a	n/a
17	USF1	chr14:105487460-105488191	HCT-116	colon:	n/a	chr14:105488088-105488104
18	POLR2A	chr14:105487666-105488387	HepG2	liver:	n/a	n/a
19	TBL1XR1	chr14:105487238-105488476	K562	blood:	n/a	n/a
20	TBP	chr14:105487205-105488401	H1-hESC	embryonic stem cell:	n/a	n/a
21	MAX	chr14:105487163-105488395	A549	lung:	n/a	chr14:105487772-105487781 chr14:105487761-105487777 chr14:105488011-105488018 chr14:105487769-105487779 chr14:105488235-105488244 chr14:105487768-105487777 chr14:105488007-105488020
22	POLR2A	chr14:105487164-105488374	GM12878	blood:	n/a	n/a
23	ETS1	chr14:105487582-105488310	A549	lung:	n/a	n/a
24	MTA3	chr14:105487817-105488427	GM12878	blood:	n/a	n/a
25	BCL3	chr14:105487663-105488547	A549	lung:	n/a	n/a
26	MXI1	chr14:105487587-105488402	K562	blood:	n/a	chr14:105487771-105487780 chr14:105487769-105487778
27	POLR2A	chr14:105487644-105488472	K562	blood:	n/a	n/a
28	STAT1	chr14:105487349-105488315	GM12878	blood:	n/a	chr14:105487868-105487880
29	FOXM1	chr14:105487265-105488207	GM12878	blood:	n/a	n/a
30	E2F4	chr14:105487232-105488471	MCF10A-Er-Src	breast:	n/a	chr14:105487754-105487763 chr14:105487505-105487514 chr14:105487575-105487586 chr14:105487576-105487588 chr14:105487525-105487534 chr14:105487553-105487562
31	CHD2	chr14:105487270-105488366	Hela-S3	cervix:	n/a	chr14:105487685-105487695 chr14:105487433-105487443 chr14:105487428-105487438
32	E2F6	chr14:105486830-105488370	K562	blood:	n/a	chr14:105487754-105487763 chr14:105487505-105487514 chr14:105487576-105487588 chr14:105487525-105487534 chr14:105487553-105487562
33	MAX	chr14:105487228-105488532	MCF-7	breast:	n/a	chr14:105487772-105487781 chr14:105487761-105487777 chr14:105488011-105488018 chr14:105487769-105487779 chr14:105488235-105488244 chr14:105487768-105487777 chr14:105488007-105488020
34	USF1	chr14:105487314-105488011	SK-N-SH_RA	brain:	n/a	n/a
35	POLR2A	chr14:105487644-105487997	K562	blood:	n/a	n/a
36	POLR2A	chr14:105487054-105488384	MCF-7	breast:	n/a	n/a
37	USF1	chr14:105487463-105488191	SK-N-SH	brain:	n/a	chr14:105488088-105488104
38	POLR2A	chr14:105486940-105488425	Hela-S3	cervix:	n/a	n/a
39	RUNX3	chr14:105486635-105488458	GM12878	blood:	n/a	n/a
40	ELK1	chr14:105487465-105488298	Hela-S3	cervix:	n/a	n/a
41	RFX5	chr14:105487310-105488427	Hela-S3	cervix:	n/a	chr14:105487504-105487513
42	TBL1XR1	chr14:105487341-105488451	GM12878	blood:	n/a	n/a
43	TCF12	chr14:105487135-105488482	A549	lung:	n/a	chr14:105488175-105488182
44	CREB1	chr14:105487955-105488437	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr14:105486676-105488767	HUVEC	blood vessel:	n/a	n/a
46	MAX	chr14:105487662-105488337	H1-hESC	embryonic stem cell:	n/a	chr14:105487772-105487781 chr14:105487761-105487777 chr14:105488011-105488018 chr14:105487769-105487779 chr14:105488235-105488244 chr14:105487768-105487777 chr14:105488007-105488020
47	MAX	chr14:105486459-105488542	A549	lung:	n/a	chr14:105487772-105487781 chr14:105487761-105487777 chr14:105488011-105488018 chr14:105487769-105487779 chr14:105488235-105488244 chr14:105487768-105487777 chr14:105487029-105487038 chr14:105488007-105488020
48	POLR2A	chr14:105485371-105492836	U87	brain:	n/a	n/a
49	USF2	chr14:105487618-105488368	Hela-S3	cervix:	n/a	chr14:105488088-105488104
50	POLR2A	chr14:105487046-105490796	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:105448840..105458160-chr14:105477229..105492100,32	MCF-7	breast:
2	chr14:105486497..105489125-chr17:57923024..57925819,2	MCF-7	breast:
3	chr14:105436785..105438892-chr14:105486187..105488298,2	MCF-7	breast:
4	chr14:105487513..105488363-chr7:44836077..44836628,2	HCT-116	colon:
5	chr1:32478407..32481120-chr14:105486396..105489029,2	MCF-7	breast:
6	chr14:105487916..105489481-chr16:89626019..89628336,2	MCF-7	breast:
7	chr14:105266268..105268334-chr14:105486957..105488737,2	K562	blood:
8	chr14:105486934..105489265-chr14:106372865..106374868,2	MCF-7	breast:
9	chr14:105487526..105488276-chr19:2476312..2477221,2	HCT-116	colon:
10	chr11:61099687..61101832-chr14:105486537..105488632,2	MCF-7	breast:
11	chr14:105440890..105445623-chr14:105485614..105489562,6	MCF-7	breast:
12	chr14:105487778..105490193-chr14:105767272..105770165,2	MCF-7	breast:
13	chr14:105487751..105489658-chr14:105685991..105688181,2	MCF-7	breast:
14	chr14:105452399..105454814-chr14:105486903..105489011,2	K562	blood:
15	chr14:105452399..105454972-chr14:105485871..105488403,3	K562	blood:
16	chr14:105487558..105490083-chr14:105516106..105518275,3	MCF-7	breast:
17	chr14:105444693..105446444-chr14:105485592..105488194,3	K562	blood:
18	chr13:30994882..30996624-chr14:105486815..105488423,2	MCF-7	breast:
19	chr14:105433937..105458439-chr14:105476653..105492775,70	MCF-7	breast:
20	chr14:105485865..105488702-chr14:105521834..105523359,2	K562	blood:
21	chr14:105486944..105489300-chr14:105953502..105956286,2	MCF-7	breast:
22	chr14:105331438..105333394-chr14:105486290..105488258,2	MCF-7	breast:
23	chr14:105487927..105490765-chr17:57920099..57922115,2	MCF-7	breast:
24	chr14:105329781..105332832-chr14:105486734..105489071,3	MCF-7	breast:

Variant related genes	Relation type
CDCA4	TF binding region
ENSG00000167526	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000149476	Chromatin interaction
ENSG00000121774	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000183484	Chromatin interaction
ENSG00000179627	Chromatin interaction
ENSG00000185567	Chromatin interaction
ENSG00000140104	Chromatin interaction
ENSG00000200084	Chromatin interaction
ENSG00000211925	Chromatin interaction
ENSG00000099860	Chromatin interaction
ENSG00000099814	Chromatin interaction
ENSG00000196262	Chromatin interaction
ENSG00000167986	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000225039	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10135843	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10137404	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138346	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143367	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148938	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150496	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10151729	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10151804	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11160828	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844494	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845844	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845866	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11848041	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848239	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12232105	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12878000	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12891766	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891996	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12892110	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12892633	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12895547	0.95[ASN][1000 genomes]
rs12897558	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289454	0.95[ASN][1000 genomes]
rs28483417	0.81[ASN][1000 genomes]
rs28675197	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34011356	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34252654	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34490246	0.90[ASN][1000 genomes]
rs34536859	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34860972	0.96[ASN][1000 genomes]
rs34971388	0.93[ASN][1000 genomes]
rs35153311	0.93[ASN][1000 genomes]
rs35545162	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35572164	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980174	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36014607	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073698	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4334223	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4340255	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492978	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57566178	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58218156	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576067	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71421897	0.94[ASN][1000 genomes]
rs71423803	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144401	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145565	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151958	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153549	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008344	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008615	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008683	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8008979	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8008984	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013233	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8845	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	nsv902420	chr14:105410183-105494262	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
11	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
13	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
14	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
17	nsv566151	chr14:105459140-105555396	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
18	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
19	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
20	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
21	nsv983941	chr14:105485574-105534240	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
22	esv3421474	chr14:105485932-105488480	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases
23	esv3437595	chr14:105486432-105489280	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases
24	esv3416622	chr14:105486557-105488955	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs28707248	C14orf79	cis	Skin Sun Exposed Lower leg	GTEx
rs28707248	C14orf79	cis	Esophagus Mucosa	GTEx
rs28707248	C14orf79	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105485800-105488000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:105485800-105488000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:105485800-105488200	Active TSS	Colonic Mucosa	Colon
4	chr14:105485800-105488200	Active TSS	Esophagus	oesophagus
5	chr14:105485800-105488800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr14:105485800-105489000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:105486000-105488000	Active TSS	Placenta Amnion	Placenta Amnion
8	chr14:105486000-105488000	Active TSS	HMEC	breast
9	chr14:105486000-105488200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:105486000-105488600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr14:105486000-105488800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr14:105486000-105488800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr14:105486000-105488800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr14:105486000-105489000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:105486000-105489000	Active TSS	GM12878-XiMat	blood
16	chr14:105486200-105488000	Active TSS	Gastric	stomach
17	chr14:105486200-105488200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:105486200-105488200	Active TSS	Left Ventricle	heart
19	chr14:105486200-105488200	Active TSS	Hela-S3	cervix
20	chr14:105486200-105488200	Active TSS	HSMMtube	muscle
21	chr14:105486200-105488200	Active TSS	NHLF	lung
22	chr14:105486200-105488400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr14:105486200-105488600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr14:105486200-105488600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:105486200-105488600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:105486200-105488800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:105486200-105489000	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr14:105486400-105488200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:105486400-105488200	Active TSS	HSMM	muscle
30	chr14:105486400-105488200	Active TSS	NHDF-Ad	bronchial
31	chr14:105486400-105488400	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr14:105486400-105488400	Active TSS	Fetal Lung	lung
33	chr14:105486400-105488400	Active TSS	Ovary	ovary
34	chr14:105486400-105488600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:105486400-105488600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:105486400-105488800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:105486400-105488800	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr14:105486400-105488800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr14:105486600-105488000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:105486600-105488000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr14:105486600-105488000	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr14:105486600-105488000	Active TSS	Brain Angular Gyrus	brain
43	chr14:105486600-105488000	Active TSS	Brain Germinal Matrix	brain
44	chr14:105486600-105488000	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr14:105486600-105488000	Active TSS	Fetal Muscle Leg	muscle
46	chr14:105486600-105488000	Active TSS	Stomach Mucosa	stomach
47	chr14:105486600-105488000	Active TSS	Thymus	Thymus
48	chr14:105486600-105488200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr14:105486600-105488200	Active TSS	Colon Smooth Muscle	Colon
50	chr14:105486600-105488200	Active TSS	Lung	lung

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