Variant report

Variant	rs28707547
Chromosome Location	chr15:92405529-92405530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28538228	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28639605	1.00[EUR][1000 genomes]
rs7163431	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92398000-92408000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:92398000-92408400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr15:92398000-92408800	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:92398000-92410000	Weak transcription	Gastric	stomach
5	chr15:92398200-92406400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:92398800-92413400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:92399000-92407200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:92399400-92408200	Weak transcription	A549	lung
9	chr15:92399400-92408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:92399800-92410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:92400000-92406200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:92400000-92406400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:92400000-92406400	Weak transcription	Stomach Mucosa	stomach
14	chr15:92400000-92408000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:92400000-92408400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:92400000-92408800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:92400000-92410200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:92400000-92410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:92400000-92410200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:92400200-92406400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:92400200-92409400	Weak transcription	Colonic Mucosa	Colon
22	chr15:92400200-92409400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:92400400-92410000	Enhancers	Brain Hippocampus Middle	brain
24	chr15:92400600-92407200	Weak transcription	Aorta	Aorta
25	chr15:92400800-92406000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:92400800-92409400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:92401000-92406400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:92401000-92406400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:92401000-92410800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr15:92401000-92412200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:92401000-92412200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr15:92401000-92415400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:92401200-92406000	Weak transcription	Fetal Brain Female	brain
34	chr15:92401200-92406400	Weak transcription	Hela-S3	cervix
35	chr15:92401200-92406800	Weak transcription	Small Intestine	intestine
36	chr15:92401200-92415000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr15:92401600-92408200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr15:92402400-92406200	Enhancers	Primary T cells from cord blood	blood
39	chr15:92402400-92408000	Weak transcription	Ovary	ovary
40	chr15:92402600-92411200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:92403000-92413200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:92403200-92408400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:92403200-92413400	Enhancers	Primary T cells fromperipheralblood	blood
44	chr15:92403600-92406200	Weak transcription	NHLF	lung
45	chr15:92403600-92406400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:92403600-92406600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:92403600-92409000	Weak transcription	Osteobl	bone
48	chr15:92404000-92408000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:92404000-92408200	Weak transcription	HMEC	breast
50	chr15:92404200-92406400	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links