Variant report

Variant	rs28708417
Chromosome Location	chr15:93294164-93294165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93286706..93290050-chr15:93292782..93296311,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10459705	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10459706	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10459707	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11074099	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11074101	0.93[ASN][1000 genomes]
rs11074102	0.89[EUR][1000 genomes]
rs12440115	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2388014	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2388017	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2892383	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56162369	0.90[EUR][1000 genomes]
rs60697464	0.90[EUR][1000 genomes]
rs6496987	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6496988	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7162785	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7170266	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7170645	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7177207	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7178356	0.88[ASN][1000 genomes]
rs7179340	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7183325	0.83[EUR][1000 genomes]
rs8024027	0.93[ASN][1000 genomes]
rs8038242	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs8038406	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8040223	0.92[ASN][1000 genomes]
rs8041271	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8041895	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8042841	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs8043355	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9672507	0.90[ASN][1000 genomes]
rs9672578	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93283000-93294400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:93289400-93297000	Weak transcription	Fetal Intestine Small	intestine

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