Variant report

Variant	rs28708567
Chromosome Location	chr4:54560111-54560112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:54560051-54560449	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr4:54559696-54560501	MCF10A-Er-Src	breast:	n/a	n/a
3	CTCF	chr4:54560000-54560150	HA-sp	spinal cord:	n/a	n/a
4	FOS	chr4:54560099-54560495	MCF10A-Er-Src	breast:	n/a	n/a
5	CTCF	chr4:54559980-54560130	HMEC	breast:	n/a	n/a
6	POLR2A	chr4:54560075-54560275	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54558279..54560810-chr4:54561903..54564082,2	K562	blood:

Variant related genes	Relation type
ENSG00000249341	TF binding region
ENSG00000249341	Chromatin interaction

rs_ID	r²[population]
rs55814032	1.00[AFR][1000 genomes]
rs73816216	1.00[AFR][1000 genomes]
rs9998548	1.00[AFR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54554800-54562000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:54555600-54561800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:54555600-54568600	Weak transcription	Right Atrium	heart
4	chr4:54559200-54560400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:54559400-54560200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:54559400-54560400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:54559400-54560400	Enhancers	Brain Angular Gyrus	brain
8	chr4:54559400-54560400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:54559400-54560600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:54559400-54561000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:54559600-54560200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:54559600-54560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:54559600-54562000	Enhancers	Liver	Liver
14	chr4:54559800-54560400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:54559800-54560600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:54559800-54560600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:54559800-54560600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:54559800-54560800	Enhancers	HMEC	breast
19	chr4:54560000-54560400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:54560000-54560400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:54560000-54560600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:54560000-54560800	Enhancers	Placenta	Placenta
23	chr4:54560000-54564800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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