Variant report

Variant	rs28708877
Chromosome Location	chr15:33397106-33397107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11852998	1.00[EUR][1000 genomes]
rs16964739	1.00[EUR][1000 genomes]
rs16964741	1.00[EUR][1000 genomes]
rs16964825	1.00[EUR][1000 genomes]
rs16964922	1.00[EUR][1000 genomes]
rs28417580	1.00[EUR][1000 genomes]
rs28505971	1.00[EUR][1000 genomes]
rs28580878	1.00[AMR][1000 genomes]
rs7171336	1.00[EUR][1000 genomes]
rs7172970	1.00[EUR][1000 genomes]
rs7179866	1.00[EUR][1000 genomes]
rs9783740	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33394800-33398400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr15:33395000-33397800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr15:33395000-33398200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:33395400-33397600	Enhancers	Primary T cells from cord blood	blood
5	chr15:33395400-33398200	Enhancers	NHLF	lung
6	chr15:33395400-33398400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:33395600-33397600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr15:33395600-33397600	Enhancers	Hela-S3	cervix
9	chr15:33395600-33397800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:33395600-33397800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:33395600-33397800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr15:33395600-33397800	Enhancers	HSMM	muscle
13	chr15:33395600-33398200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr15:33395600-33398200	Enhancers	Dnd41	blood
15	chr15:33395800-33397800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:33396000-33397600	Enhancers	NHEK	skin
17	chr15:33396000-33398200	Enhancers	NHDF-Ad	bronchial
18	chr15:33396000-33398400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:33396200-33397200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr15:33396200-33397400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:33396200-33397400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:33396200-33397400	Enhancers	HUVEC	blood vessel
23	chr15:33396400-33397200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:33396400-33397200	Enhancers	Fetal Kidney	kidney
25	chr15:33396400-33397200	Flanking Active TSS	HSMMtube	muscle
26	chr15:33396400-33397400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:33396400-33397400	Enhancers	NH-A	brain
28	chr15:33396400-33397800	Enhancers	Primary hematopoietic stem cells	blood
29	chr15:33396400-33398400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:33396600-33397400	Enhancers	Fetal Muscle Leg	muscle
31	chr15:33396800-33397200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:33396800-33397200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr15:33397000-33397200	Enhancers	Osteobl	bone
34	chr15:33397000-33397400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr15:33397000-33397400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:33397000-33397400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:33397000-33397600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:33397000-33397600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:33397000-33397800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:33397000-33398200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:33397000-33398400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:33397000-33398400	Enhancers	Fetal Thymus	thymus
43	chr15:33397000-33401200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:33397000-33402400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:33397000-33403000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links