Variant report

Variant	rs2870933
Chromosome Location	chr12:67854346-67854347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10506549	0.84[GIH][hapmap]
rs1317854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921001	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2870934	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35351458	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581757	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960669	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67850200-67857800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr12:67851800-67856200	Weak transcription	Right Ventricle	heart
3	chr12:67852000-67862800	Weak transcription	Right Atrium	heart
4	chr12:67852200-67857000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr12:67852200-67857200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:67852600-67855000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr12:67853600-67855800	Weak transcription	Psoas Muscle	Psoas
8	chr12:67853600-67856200	Weak transcription	Left Ventricle	heart
9	chr12:67853600-67856200	Weak transcription	Spleen	Spleen
10	chr12:67853800-67856000	Weak transcription	Ovary	ovary
11	chr12:67853800-67857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:67854200-67854400	Enhancers	Fetal Heart	heart
13	chr12:67854200-67854400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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