Variant report

Variant	rs28709871
Chromosome Location	chr4:7091994-7091995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11943685	0.89[ASN][1000 genomes]
rs12331196	0.89[ASN][1000 genomes]
rs55671467	0.93[EUR][1000 genomes]
rs56110003	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv878534	chr4:7084985-7121880	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7090600-7092000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:7090600-7092200	Enhancers	Fetal Lung	lung
3	chr4:7090600-7092200	Enhancers	Fetal Stomach	stomach
4	chr4:7090600-7093200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:7090800-7092000	Enhancers	Pancreas	Pancrea
6	chr4:7090800-7092200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:7090800-7093600	Enhancers	Fetal Brain Male	brain
8	chr4:7090800-7093600	Enhancers	Ovary	ovary
9	chr4:7091200-7092000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:7091400-7092000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr4:7091400-7092000	Enhancers	Fetal Brain Female	brain
12	chr4:7091400-7092000	Enhancers	Fetal Muscle Trunk	muscle
13	chr4:7091400-7092000	Enhancers	Fetal Muscle Leg	muscle
14	chr4:7091400-7092000	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:7091400-7092000	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr4:7091600-7103600	Weak transcription	Brain Angular Gyrus	brain
17	chr4:7091800-7092000	Enhancers	Aorta	Aorta
18	chr4:7091800-7092600	Weak transcription	Fetal Kidney	kidney
19	chr4:7091800-7096400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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