Variant report

Variant	rs28711477
Chromosome Location	chr14:78783124-78783125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17107300	0.83[ASN][1000 genomes]
rs4903748	0.84[ASN][1000 genomes]
rs8003641	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78769200-78783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78779200-78787000	Enhancers	Brain Germinal Matrix	brain
3	chr14:78779400-78786000	Weak transcription	Brain Anterior Caudate	brain
4	chr14:78780400-78783200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:78780400-78783400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:78780600-78783200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr14:78780600-78783800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:78780800-78783600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:78780800-78783800	Enhancers	K562	blood
10	chr14:78781000-78783600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:78781600-78783200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:78781800-78783800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:78782000-78783200	Enhancers	Brain Angular Gyrus	brain
14	chr14:78782400-78783600	Enhancers	Brain Hippocampus Middle	brain
15	chr14:78782600-78783600	Enhancers	Fetal Brain Male	brain
16	chr14:78782600-78783800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:78782800-78783400	Enhancers	Brain Cingulate Gyrus	brain
18	chr14:78783000-78783200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:78783000-78783400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr14:78783000-78783400	Enhancers	Brain Substantia Nigra	brain
21	chr14:78783000-78783600	Enhancers	Primary monocytes fromperipheralblood	blood

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