Variant report

Variant	rs28715783
Chromosome Location	chr4:78092231-78092232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78091335..78093666-chr4:78093856..78096370,3	K562	blood:
2	chr4:78089519..78092376-chr4:78099146..78100867,2	MCF-7	breast:
3	chr4:78076120..78077897-chr4:78090608..78092538,2	K562	blood:
4	chr4:77995085..77997932-chr4:78090156..78092952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10012985	0.80[AFR][1000 genomes]
rs28385417	0.90[AFR][1000 genomes]
rs28695355	0.95[AFR][1000 genomes]
rs28703963	0.95[AFR][1000 genomes]
rs4150043	0.95[AFR][1000 genomes]
rs4150064	0.95[AFR][1000 genomes]
rs4150065	0.95[AFR][1000 genomes]
rs4150085	0.95[AFR][1000 genomes]
rs9654144	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78080000-78092800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:78080000-78093400	Weak transcription	Right Ventricle	heart
3	chr4:78080200-78094400	Weak transcription	Psoas Muscle	Psoas
4	chr4:78080400-78092400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr4:78080800-78092400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:78081200-78092400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:78081200-78092400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:78081200-78092400	Strong transcription	Placenta	Placenta
9	chr4:78081200-78092400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:78081200-78092600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:78081200-78092600	Strong transcription	Fetal Muscle Trunk	muscle
12	chr4:78081200-78093000	Strong transcription	Primary hematopoietic stem cells	blood
13	chr4:78081200-78093600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:78081400-78092600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:78081800-78092400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:78083000-78092400	Strong transcription	Stomach Smooth Muscle	stomach
17	chr4:78083200-78093600	Weak transcription	Small Intestine	intestine
18	chr4:78083400-78093000	Weak transcription	Fetal Heart	heart
19	chr4:78083400-78093600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:78083400-78095600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:78083400-78095600	Weak transcription	HepG2	liver
22	chr4:78084400-78092400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr4:78084600-78097800	Weak transcription	Esophagus	oesophagus
24	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
25	chr4:78084800-78092400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:78085800-78096600	Weak transcription	Brain Angular Gyrus	brain
27	chr4:78086200-78092800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:78086200-78095600	Weak transcription	Ovary	ovary
29	chr4:78086400-78094200	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:78086800-78092400	Strong transcription	Fetal Kidney	kidney
31	chr4:78086800-78093800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr4:78087000-78092800	Weak transcription	NHLF	lung
33	chr4:78087200-78093200	Strong transcription	Fetal Thymus	thymus
34	chr4:78087200-78094400	Strong transcription	Primary B cells from cord blood	blood
35	chr4:78087400-78100600	Weak transcription	Hela-S3	cervix
36	chr4:78087600-78092400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:78087600-78093200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:78087600-78095000	Weak transcription	HUVEC	blood vessel
39	chr4:78087800-78092800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:78088000-78092400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:78088000-78092400	Strong transcription	Fetal Brain Female	brain
42	chr4:78088600-78092400	Strong transcription	Fetal Stomach	stomach
43	chr4:78088600-78092600	Strong transcription	Thymus	Thymus
44	chr4:78088800-78092400	Strong transcription	Brain Germinal Matrix	brain
45	chr4:78088800-78092400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr4:78088800-78093200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr4:78088800-78094000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr4:78088800-78096800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:78089000-78093800	Weak transcription	Colon Smooth Muscle	Colon
50	chr4:78089400-78093200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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