Variant report

Variant	rs28716868
Chromosome Location	chr8:61887689-61887690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34222054	1.00[EUR][1000 genomes]
rs67910121	1.00[EUR][1000 genomes]
rs73264745	1.00[EUR][1000 genomes]
rs7845108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61884400-61887800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr8:61884800-61889400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:61884800-61890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:61884800-61895200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:61884800-61896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:61885200-61888000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:61886000-61889800	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:61886200-61890200	Enhancers	Primary B cells from cord blood	blood
9	chr8:61886400-61888600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:61886600-61888000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:61886600-61888800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:61886600-61893400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:61886800-61888200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr8:61887000-61888600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr8:61887400-61888200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:61887600-61888000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:61887600-61888400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr8:61887600-61888600	Enhancers	Primary T cells from cord blood	blood
19	chr8:61887600-61889200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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