Variant report

Variant	rs28718461
Chromosome Location	chr4:45239839-45239840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1156837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28371432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28472864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28477667	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28516497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28579508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587540	0.96[AFR][1000 genomes]
rs2860044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28619482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28624512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28665095	1.00[AMR][1000 genomes]
rs28702035	0.98[AFR][1000 genomes]
rs28729113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28729628	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28792783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28802153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28877364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28877922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28885749	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348552	0.84[AFR][1000 genomes]
rs4694794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987722	1.00[AMR][1000 genomes]
rs9998911	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv461349	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv594105	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv878984	chr4:45191856-45321022	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv461351	chr4:45224500-45283866	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv594106	chr4:45224500-45283866	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv4322	chr4:45235596-45280072	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45237600-45243800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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