Variant report

Variant	rs28720063
Chromosome Location	chr22:28582812-28582813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1072967	0.88[ASN][1000 genomes]
rs11912165	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2064360	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2294969	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5752687	0.82[ASN][1000 genomes]
rs5752693	0.92[EUR][1000 genomes]
rs5762449	0.82[ASN][1000 genomes]
rs5762474	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5762478	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5762492	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762495	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5762498	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5762504	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762506	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5762508	0.92[ASN][1000 genomes]
rs5762540	0.84[ASN][1000 genomes]
rs5997354	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28572200-28597800	Weak transcription	Dnd41	blood
2	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
3	chr22:28577400-28584600	Weak transcription	Fetal Brain Female	brain
4	chr22:28577800-28600400	Weak transcription	Right Atrium	heart
5	chr22:28578000-28583200	Weak transcription	Fetal Brain Male	brain
6	chr22:28578400-28583600	Weak transcription	Fetal Muscle Leg	muscle
7	chr22:28578400-28583800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr22:28579600-28584600	Weak transcription	Psoas Muscle	Psoas
9	chr22:28579600-28587400	Weak transcription	Lung	lung
10	chr22:28580200-28583600	Weak transcription	Fetal Lung	lung
11	chr22:28580400-28583800	Weak transcription	Brain Germinal Matrix	brain
12	chr22:28582600-28583600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr22:28582800-28583000	Enhancers	Fetal Heart	heart
14	chr22:28582800-28583200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr22:28582800-28583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr22:28582800-28585000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr22:28582800-28585000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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