Variant report

Variant	rs28734025
Chromosome Location	chr15:83875704-83875705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83834964..83840588-chr15:83874121..83878306,6	MCF-7	breast:
2	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
3	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
4	chr15:83652926..83655970-chr15:83874776..83878125,3	MCF-7	breast:
5	chr15:83678260..83683197-chr15:83874959..83878158,5	K562	blood:
6	chr15:83706535..83711494-chr15:83875161..83878411,4	MCF-7	breast:
7	chr15:83797822..83799422-chr15:83873732..83875902,2	K562	blood:
8	chr15:83733297..83738085-chr15:83874642..83880991,12	MCF-7	breast:
9	chr15:83874825..83876698-chr15:84113780..84116489,2	MCF-7	breast:
10	chr15:83875339..83878212-chr17:65989153..65990840,2	MCF-7	breast:
11	chr15:83826728..83828298-chr15:83873729..83876383,2	MCF-7	breast:
12	chr15:83678614..83685168-chr15:83874398..83879059,12	MCF-7	breast:
13	chr15:83476923..83480237-chr15:83875108..83878990,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000064726	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000156232	Chromatin interaction
ENSG00000186665	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000140600	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000263643	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3357133	chr15:83874773-83877521	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3373243	chr15:83875373-83878121	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3360287	chr15:83875498-83877971	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83872000-83877200	Active TSS	GM12878-XiMat	blood
2	chr15:83873400-83877600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:83873600-83877000	Active TSS	Stomach Smooth Muscle	stomach
4	chr15:83874000-83877200	Active TSS	H1 Cell Line	embryonic stem cell
5	chr15:83874000-83877400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr15:83874200-83877200	Active TSS	Aorta	Aorta
7	chr15:83874200-83877400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr15:83874400-83875800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:83874400-83877600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr15:83874600-83876000	Active TSS	Right Atrium	heart
11	chr15:83874600-83877000	Active TSS	Fetal Muscle Leg	muscle
12	chr15:83874600-83877200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:83874600-83877400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr15:83874600-83877400	Active TSS	Brain Anterior Caudate	brain
15	chr15:83874600-83877600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:83874600-83877800	Active TSS	Fetal Brain Female	brain
17	chr15:83874800-83875800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:83874800-83875800	Active TSS	Fetal Brain Male	brain
19	chr15:83874800-83877000	Active TSS	HUVEC	blood vessel
20	chr15:83874800-83877200	Active TSS	Ovary	ovary
21	chr15:83874800-83877400	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr15:83874800-83877400	Active TSS	Brain Angular Gyrus	brain
23	chr15:83874800-83877400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:83874800-83877400	Active TSS	NH-A	brain
25	chr15:83874800-83877600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:83874800-83877800	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:83875000-83875800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr15:83875000-83876800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:83875000-83876800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:83875000-83876800	Active TSS	HMEC	breast
31	chr15:83875000-83877000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:83875000-83877200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:83875000-83877200	Active TSS	A549	lung
34	chr15:83875000-83877200	Active TSS	NHDF-Ad	bronchial
35	chr15:83875000-83877400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:83875000-83877400	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr15:83875000-83877400	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr15:83875000-83877400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:83875000-83877400	Active TSS	Fetal Kidney	kidney
40	chr15:83875000-83877400	Active TSS	Fetal Muscle Trunk	muscle
41	chr15:83875000-83877600	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr15:83875200-83875800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:83875200-83875800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
44	chr15:83875200-83876000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr15:83875200-83876200	Bivalent/Poised TSS	Psoas Muscle	Psoas
46	chr15:83875200-83876200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
47	chr15:83875200-83876800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:83875200-83876800	Active TSS	Fetal Intestine Large	intestine
49	chr15:83875200-83877000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:83875200-83877000	Active TSS	Fetal Stomach	stomach

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