Variant report

Variant	rs28735184
Chromosome Location	chr9:98255438-98255439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98254778..98257186-chr9:98269292..98272061,2	MCF-7	breast:
2	chr9:98253127..98255795-chr9:98271024..98273748,2	K562	blood:
3	chr9:98187649..98190435-chr9:98252906..98255611,3	MCF-7	breast:
4	chr9:98253772..98257280-chr9:98266534..98270044,4	K562	blood:

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction
ENSG00000237857	Chromatin interaction
ENSG00000271155	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16905572	0.90[ASN][1000 genomes]
rs2236405	0.87[ASN][1000 genomes]
rs2274690	0.89[ASN][1000 genomes]
rs2277183	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2277184	0.93[ASN][1000 genomes]
rs28413575	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3824487	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1051665	chr9:98234404-98264577	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv824994	chr9:98239963-98314431	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv824995	chr9:98243455-98326547	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv824996	chr9:98245375-98283861	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1053434	chr9:98248328-98259178	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98223400-98266400	Weak transcription	Hela-S3	cervix
2	chr9:98232200-98261200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:98239800-98260000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:98240200-98267400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:98240400-98256200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:98240800-98259800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:98241000-98258400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:98242000-98256400	Weak transcription	Esophagus	oesophagus
9	chr9:98242200-98256200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:98242400-98256200	Weak transcription	NHLF	lung
11	chr9:98242400-98266400	Weak transcription	HSMMtube	muscle
12	chr9:98242600-98256200	Weak transcription	Placenta	Placenta
13	chr9:98242800-98256600	Weak transcription	Fetal Kidney	kidney
14	chr9:98242800-98266600	Weak transcription	Adipose Nuclei	Adipose
15	chr9:98243000-98255800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:98243000-98256200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:98243000-98256800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:98243000-98267800	Weak transcription	Aorta	Aorta
19	chr9:98243400-98256400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:98243600-98256400	Weak transcription	HepG2	liver
21	chr9:98243800-98260000	Weak transcription	HSMM	muscle
22	chr9:98244000-98255600	Weak transcription	GM12878-XiMat	blood
23	chr9:98244400-98256600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:98244800-98257000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:98245000-98256800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:98245200-98256600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:98246600-98259600	Weak transcription	Right Atrium	heart
28	chr9:98246800-98256400	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:98247000-98256600	Weak transcription	Fetal Heart	heart
30	chr9:98248000-98255800	Weak transcription	Fetal Brain Male	brain
31	chr9:98248000-98256200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:98248000-98258400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:98249000-98256200	Weak transcription	Colonic Mucosa	Colon
34	chr9:98249200-98255600	Weak transcription	Fetal Intestine Large	intestine
35	chr9:98249200-98256400	Weak transcription	Right Ventricle	heart
36	chr9:98249200-98263600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:98249400-98256400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:98249400-98257800	Weak transcription	Liver	Liver
39	chr9:98249600-98256200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr9:98249600-98256200	Weak transcription	Lung	lung
41	chr9:98250200-98256200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:98250400-98255600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:98250400-98262800	Weak transcription	Stomach Mucosa	stomach
44	chr9:98251400-98256400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:98251600-98255600	Weak transcription	Brain Anterior Caudate	brain
46	chr9:98251600-98256200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr9:98251600-98256600	Weak transcription	K562	blood
48	chr9:98251800-98256600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr9:98252000-98256200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:98252600-98257200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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