Variant report

Variant	rs28736823
Chromosome Location	chr7:38623695-38623696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11978903	1.00[AMR][1000 genomes]
rs28445255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28575681	0.94[AFR][1000 genomes]
rs28695975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34594861	1.00[AMR][1000 genomes]
rs56905382	1.00[AMR][1000 genomes]
rs58000336	1.00[AMR][1000 genomes]
rs59548685	1.00[AMR][1000 genomes]
rs73348834	1.00[AMR][1000 genomes]
rs73348845	1.00[AMR][1000 genomes]
rs73348855	1.00[AMR][1000 genomes]
rs73348860	1.00[AMR][1000 genomes]
rs73348864	1.00[AMR][1000 genomes]
rs73348869	1.00[AMR][1000 genomes]
rs73348871	1.00[AMR][1000 genomes]
rs73348876	1.00[AMR][1000 genomes]
rs73348897	1.00[AMR][1000 genomes]
rs73350792	1.00[AMR][1000 genomes]
rs73352603	1.00[AMR][1000 genomes]
rs73356685	1.00[AMR][1000 genomes]
rs7784259	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv606674	chr7:38619348-38655758	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38608400-38634800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:38614200-38623800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:38615400-38626800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:38623200-38626200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:38623400-38624000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:38623400-38624200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:38623400-38629400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:38623600-38623800	Enhancers	NHDF-Ad	bronchial
9	chr7:38623600-38624000	Enhancers	Fetal Heart	heart
10	chr7:38623600-38624000	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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