Variant report

Variant	rs28740189
Chromosome Location	chr12:40391674-40391675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17442122	1.00[CHB][hapmap]
rs17458182	1.00[JPT][hapmap]
rs17489225	1.00[JPT][hapmap]
rs17489424	1.00[CHB][hapmap]
rs17518106	1.00[CHB][hapmap]
rs28365682	1.00[JPT][hapmap]
rs28370665	1.00[CHB][hapmap]
rs28370717	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv899027	chr12:40388510-40428561	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40380800-40393400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr12:40384400-40391800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:40384400-40405200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:40384400-40405400	Weak transcription	Pancreas	Pancrea
5	chr12:40390200-40393400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:40390400-40392200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:40391400-40391800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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