Variant report

Variant	rs2874025
Chromosome Location	chr14:67411112-67411113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67406512..67408916-chr14:67410508..67412779,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs41301475	1.00[ASN][1000 genomes]
rs56141220	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990909	1.00[ASN][1000 genomes]
rs61990916	1.00[ASN][1000 genomes]
rs61990920	1.00[ASN][1000 genomes]
rs61990925	1.00[ASN][1000 genomes]
rs763286	1.00[ASN][1000 genomes]
rs8012697	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385263	chr14:66514718-67511481	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv1834170	chr14:67103140-67527235	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2829998	chr14:67103579-67626594	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1838724	chr14:67232573-67527235	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763071	chr14:67284476-67597237	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67387800-67411400	Weak transcription	Fetal Stomach	stomach
2	chr14:67399600-67411400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:67405000-67411800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:67405200-67416400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:67405800-67416400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr14:67406000-67414600	ZNF genes & repeats	Liver	Liver
7	chr14:67406000-67416200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr14:67406200-67414600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr14:67406200-67416400	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr14:67407200-67411600	Weak transcription	A549	lung
11	chr14:67407400-67411400	Weak transcription	Gastric	stomach
12	chr14:67407600-67411400	Weak transcription	Esophagus	oesophagus
13	chr14:67407600-67411400	Weak transcription	Pancreas	Pancrea
14	chr14:67408400-67414200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:67408400-67414600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:67408800-67411400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:67409000-67414000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:67409000-67414000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:67409800-67412400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:67409800-67413600	ZNF genes & repeats	GM12878-XiMat	blood
21	chr14:67409800-67414000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr14:67410000-67412200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:67410000-67412200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
24	chr14:67410000-67412600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr14:67410000-67412600	ZNF genes & repeats	NHEK	skin
26	chr14:67410000-67412800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:67410000-67414600	ZNF genes & repeats	Brain Hippocampus Middle	brain
28	chr14:67410200-67411600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr14:67410200-67414200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:67410200-67414800	ZNF genes & repeats	Brain Anterior Caudate	brain
31	chr14:67410200-67415800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr14:67410400-67412200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
33	chr14:67410600-67412200	ZNF genes & repeats	Psoas Muscle	Psoas
34	chr14:67410600-67413400	ZNF genes & repeats	Left Ventricle	heart
35	chr14:67410600-67414600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr14:67410800-67412200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:67410800-67412800	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr14:67410800-67414600	ZNF genes & repeats	Dnd41	blood
39	chr14:67411000-67412000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
40	chr14:67411000-67412200	ZNF genes & repeats	Fetal Heart	heart
41	chr14:67411000-67412200	ZNF genes & repeats	Lung	lung
42	chr14:67411000-67412400	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr14:67411000-67412400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
44	chr14:67411000-67413400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr14:67411000-67413400	ZNF genes & repeats	Right Ventricle	heart
46	chr14:67411000-67414800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

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