Variant report

Variant	rs28740836
Chromosome Location	chr4:75142348-75142349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10006334	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10029404	1.00[ASN][1000 genomes]
rs1246764	1.00[ASN][1000 genomes]
rs28414214	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28479222	1.00[ASN][1000 genomes]
rs28710869	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs505019	1.00[ASN][1000 genomes]
rs537859	1.00[ASN][1000 genomes]
rs553444	1.00[ASN][1000 genomes]
rs7441673	1.00[ASN][1000 genomes]
rs9993140	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9994571	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75119800-75148800	Weak transcription	Aorta	Aorta
2	chr4:75125200-75142600	Weak transcription	K562	blood
3	chr4:75125200-75158800	Weak transcription	Left Ventricle	heart
4	chr4:75132200-75157800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:75133800-75160000	Weak transcription	Liver	Liver
6	chr4:75134000-75173800	Weak transcription	Primary T cells from cord blood	blood
7	chr4:75134400-75148800	Weak transcription	HSMM	muscle
8	chr4:75134600-75148400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:75134800-75148200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:75134800-75148200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:75134800-75148800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:75135000-75147600	Weak transcription	HMEC	breast
13	chr4:75135600-75143000	Weak transcription	NHEK	skin
14	chr4:75139600-75147600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:75140200-75144800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:75140200-75146000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:75141200-75147200	Strong transcription	Primary hematopoietic stem cells	blood
18	chr4:75141800-75151200	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links