Variant report

Variant	rs2874545
Chromosome Location	chr6:163690636-163690637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12174929	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12525217	0.83[EUR][1000 genomes]
rs1534939	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4470828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475303	0.84[EUR][1000 genomes]
rs4576225	0.81[EUR][1000 genomes]
rs4579329	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4708985	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4709688	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62428011	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6915137	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7746999	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7752568	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7770851	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9356103	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9365546	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163682000-163701600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163686000-163706000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:163686400-163691800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:163688400-163691000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links