Variant report

Variant	rs28749166
Chromosome Location	chr6:29920951-29920952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:43)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:43 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:29920937-29921137	MCF10A-Er-Src	breast:	n/a	n/a
2	EP300	chr6:29920634-29921267	A549	lung:	n/a	n/a
3	FOS	chr6:29920677-29921326	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr6:29920699-29921264	MCF10A-Er-Src	breast:	n/a	n/a
5	TEAD4	chr6:29920676-29921099	A549	lung:	n/a	n/a
6	NFIC	chr6:29920630-29921363	SK-N-SH	brain:	n/a	n/a
7	PBX3	chr6:29920611-29921325	SK-N-SH	brain:	n/a	n/a
8	NR3C1	chr6:29920717-29921190	A549	lung:	n/a	n/a
9	FOS	chr6:29920684-29921270	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr6:29920694-29921154	MCF10A-Er-Src	breast:	n/a	n/a
11	JUND	chr6:29920600-29921304	SK-N-SH	brain:	n/a	n/a
12	FOSL1	chr6:29920649-29921461	HCT-116	colon:	n/a	n/a
13	CBX3	chr6:29920575-29921454	HCT-116	colon:	n/a	n/a
14	MEF2A	chr6:29920703-29921365	SK-N-SH	brain:	n/a	n/a
15	POLR2A	chr6:29920738-29921163	SK-N-SH	brain:	n/a	n/a
16	SP1	chr6:29920672-29921275	A549	lung:	n/a	n/a
17	GATA3	chr6:29920615-29921377	A549	lung:	n/a	n/a
18	SP1	chr6:29920647-29921377	HCT-116	colon:	n/a	n/a
19	FOS	chr6:29920685-29921275	MCF10A-Er-Src	breast:	n/a	n/a
20	FOS	chr6:29920665-29921284	HUVEC	blood vessel:	n/a	n/a
21	STAT3	chr6:29920766-29921134	MCF10A-Er-Src	breast:	n/a	n/a
22	TEAD4	chr6:29920630-29921172	HCT-116	colon:	n/a	n/a
23	FOSL2	chr6:29920758-29921244	A549	lung:	n/a	n/a
24	RXRA	chr6:29920705-29921361	SK-N-SH	brain:	n/a	n/a
25	TEAD4	chr6:29920737-29921140	HCT-116	colon:	n/a	n/a
26	MAX	chr6:29920664-29921185	A549	lung:	n/a	n/a
27	FOSL2	chr6:29920553-29921362	A549	lung:	n/a	n/a
28	JUND	chr6:29920645-29921459	HCT-116	colon:	n/a	n/a
29	MYC	chr6:29920684-29921247	MCF10A-Er-Src	breast:	n/a	n/a
30	MAX	chr6:29920664-29921326	A549	lung:	n/a	n/a
31	SP1	chr6:29920706-29921280	A549	lung:	n/a	n/a
32	BHLHE40	chr6:29920783-29921023	A549	lung:	n/a	n/a
33	TEAD4	chr6:29920735-29921223	A549	lung:	n/a	n/a
34	JUN	chr6:29920751-29921344	HUVEC	blood vessel:	n/a	n/a
35	JUND	chr6:29920569-29921371	HCT-116	colon:	n/a	n/a
36	EP300	chr6:29920738-29921236	A549	lung:	n/a	n/a
37	FOSL2	chr6:29920563-29921346	SK-N-SH	brain:	n/a	n/a
38	NR3C1	chr6:29920739-29921166	A549	lung:	n/a	n/a
39	NR3C1	chr6:29920695-29921318	A549	lung:	n/a	n/a
40	POLR2A	chr6:29920841-29921054	MCF10A-Er-Src	breast:	n/a	n/a
41	SP1	chr6:29920648-29921330	HCT-116	colon:	n/a	n/a
42	TCF12	chr6:29920634-29921141	A549	lung:	n/a	n/a
43	FOSL1	chr6:29920598-29921295	HCT-116	colon:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:29917150..29919030-chr6:29920403..29922798,2	MCF-7	breast:
2	chr6:29820057..29821697-chr6:29920603..29922626,2	K562	blood:
3	chr6:29920527..29922060-chr6:29926055..29928693,2	K562	blood:
4	chr6:29920547..29922811-chr6:29925895..29928597,2	MCF-7	breast:

No data

Variant related genes	Relation type
HLA-W	TF binding region
ENSG00000233265	Chromatin interaction

Extended variants
information (count: 149 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1059686	0.81[EUR][1000 genomes]
rs13192355	0.88[ASN][1000 genomes]
rs13201160	0.83[EUR][1000 genomes]
rs13201284	0.82[EUR][1000 genomes]
rs13214982	0.83[EUR][1000 genomes]
rs13215305	0.82[EUR][1000 genomes]
rs13215306	0.82[EUR][1000 genomes]
rs16896724	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2517703	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2517708	0.81[EUR][1000 genomes]
rs2517712	0.84[EUR][1000 genomes]
rs2517715	0.83[EUR][1000 genomes]
rs2517719	0.83[EUR][1000 genomes]
rs2517721	0.82[EUR][1000 genomes]
rs2735093	0.83[EUR][1000 genomes]
rs2735097	0.82[EUR][1000 genomes]
rs2735098	0.82[EUR][1000 genomes]
rs2735103	0.81[EUR][1000 genomes]
rs28749157	0.83[EUR][1000 genomes]
rs28749158	0.83[EUR][1000 genomes]
rs28749159	0.84[EUR][1000 genomes]
rs28749167	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916804	0.81[EUR][1000 genomes]
rs2916805	0.83[EUR][1000 genomes]
rs2975041	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2975047	0.81[EUR][1000 genomes]
rs2975048	0.81[EUR][1000 genomes]
rs2975050	0.81[EUR][1000 genomes]
rs2975051	0.80[EUR][1000 genomes]
rs2975058	0.81[EUR][1000 genomes]
rs3016022	0.81[EUR][1000 genomes]
rs9404954	0.81[EUR][1000 genomes]
rs9404955	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:116 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv3431350	chr6:29765473-29922767	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv3451016	chr6:29774115-29929436	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	esv17468	chr6:29782014-29923275	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv3411103	chr6:29783090-29930409	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
13	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	nsv820564	chr6:29814830-29923275	Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv823469	chr6:29814830-29923275	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
17	esv1845786	chr6:29817123-29955129	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
18	esv1848127	chr6:29817323-29966451	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
19	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
20	esv3369212	chr6:29827361-29960177	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	esv1824193	chr6:29831309-29925490	Strong transcription Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
22	esv32544	chr6:29831716-29944103	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
23	esv1824141	chr6:29832266-29924807	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
24	esv2757159	chr6:29834472-29965501	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
25	esv3376588	chr6:29834667-29964324	Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
26	esv2763941	chr6:29836636-29921127	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
27	esv2761013	chr6:29837072-29937311	Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
28	esv1806000	chr6:29837192-29921127	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
29	esv1809224	chr6:29837192-29921127	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
30	esv1822838	chr6:29837192-29921127	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
31	esv1823287	chr6:29837192-29921127	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
32	nsv442976	chr6:29837192-29921127	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
33	nsv10810	chr6:29837465-29961415	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
34	nsv5240	chr6:29838459-29928558	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
35	nsv883559	chr6:29840648-29923128	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
36	nsv870444	chr6:29842885-29949545	Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
37	esv10073	chr6:29849376-29923147	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
38	esv2830159	chr6:29851443-29922299	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
39	esv1799711	chr6:29851559-29925870	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
40	esv1832016	chr6:29851559-29925870	Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
41	esv1817000	chr6:29854870-29924807	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
42	nsv533601	chr6:29854899-29937583	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
43	esv3349629	chr6:29859050-29927789	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
44	nsv432860	chr6:29859221-29938821	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
45	nsv462733	chr6:29859517-29937833	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
46	nsv601331	chr6:29859517-29937833	Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
47	esv3415023	chr6:29866995-29928760	Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
48	esv3343351	chr6:29868584-29930007	Genic enhancers Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
49	nsv1017458	chr6:29871636-29937262	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
50	esv2754059	chr6:29871636-29938777	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs28749166	HLA.G	cis	multi-tissue	Pritchard
rs28749166	HLA-A	Cis_1M	lymphoblastoid	RTeQTL
rs28749166	LOC730399///LOC731974	Cis_1M	lymphoblastoid	RTeQTL
rs28749166	HLA-G	Cis_1M	lymphoblastoid	RTeQTL
rs28749166	HCG4P6	Cis_1M	lymphoblastoid	RTeQTL
rs28749166	HLA.A29.1	cis	multi-tissue	Pritchard

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29911200-29921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:29912600-29921000	Weak transcription	Psoas Muscle	Psoas
3	chr6:29912800-29924200	Weak transcription	Right Atrium	heart
4	chr6:29913000-29924000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:29913000-29924200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:29913400-29932200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:29913400-29932600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:29913600-29921600	Weak transcription	NHEK	skin
9	chr6:29913600-29924400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:29913600-29925400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:29913800-29921000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:29913800-29932200	Weak transcription	Small Intestine	intestine
13	chr6:29914000-29921000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:29914000-29923800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:29914000-29924200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:29914000-29932200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:29914600-29932200	Weak transcription	Colonic Mucosa	Colon
18	chr6:29914800-29932200	Weak transcription	Right Ventricle	heart
19	chr6:29915400-29931800	Weak transcription	Fetal Thymus	thymus
20	chr6:29915600-29921000	Weak transcription	HSMMtube	muscle
21	chr6:29915600-29932000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:29916400-29926400	Weak transcription	GM12878-XiMat	blood
23	chr6:29916800-29921400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:29916800-29922200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:29916800-29924400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:29916800-29928200	Weak transcription	HepG2	liver
27	chr6:29916800-29930000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:29916800-29932200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:29916800-29932200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:29916800-29932200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:29916800-29933000	Weak transcription	Esophagus	oesophagus
32	chr6:29916800-29933000	Weak transcription	Pancreas	Pancrea
33	chr6:29916800-29933200	Weak transcription	Lung	lung
34	chr6:29916800-29940200	Weak transcription	Gastric	stomach
35	chr6:29917000-29923400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:29917000-29926800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:29917000-29931800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:29917200-29921000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:29917200-29926000	Weak transcription	Adipose Nuclei	Adipose
40	chr6:29917200-29926000	Weak transcription	Spleen	Spleen
41	chr6:29917200-29932000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:29917200-29932200	Weak transcription	Liver	Liver
43	chr6:29917200-29932200	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:29917400-29927400	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:29917800-29921000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:29917800-29922200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:29917800-29926400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:29917800-29932200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:29918000-29926000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:29918000-29926600	Weak transcription	Primary B cells from peripheral blood	blood

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