Variant report

Variant	rs2874961
Chromosome Location	chr4:21779919-21779920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10011983	0.83[EUR][1000 genomes]
rs10012055	0.84[EUR][1000 genomes]
rs10017454	0.82[EUR][1000 genomes]
rs11732235	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930660	0.83[EUR][1000 genomes]
rs11930835	0.83[EUR][1000 genomes]
rs11935715	0.83[EUR][1000 genomes]
rs11939687	0.83[EUR][1000 genomes]
rs12509958	0.83[EUR][1000 genomes]
rs12513386	0.83[EUR][1000 genomes]
rs13107513	0.83[EUR][1000 genomes]
rs13107915	0.84[EUR][1000 genomes]
rs13138025	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1380269	0.83[EUR][1000 genomes]
rs1450731	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459271	0.83[EUR][1000 genomes]
rs1459272	0.83[EUR][1000 genomes]
rs1459273	0.82[EUR][1000 genomes]
rs1471222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824367	0.83[EUR][1000 genomes]
rs1839524	0.84[EUR][1000 genomes]
rs1839525	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1841179	0.84[EUR][1000 genomes]
rs1841180	0.83[EUR][1000 genomes]
rs1841181	0.82[EUR][1000 genomes]
rs1841183	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841184	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868742	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868743	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868744	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009784	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4101629	0.84[EUR][1000 genomes]
rs4361375	0.84[EUR][1000 genomes]
rs4496573	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4550912	0.84[EUR][1000 genomes]
rs4568228	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5011097	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5011098	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55877532	0.83[EUR][1000 genomes]
rs6414727	0.81[EUR][1000 genomes]
rs6448074	0.82[EUR][1000 genomes]
rs6448077	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448078	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448080	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448082	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448083	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448084	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448085	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822291	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838654	0.82[EUR][1000 genomes]
rs6838747	0.82[EUR][1000 genomes]
rs6845965	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6852732	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6855072	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs717531	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7376538	0.83[EUR][1000 genomes]
rs7658944	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7681415	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697475	0.84[EUR][1000 genomes]
rs896122	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21766600-21780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:21769400-21780400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:21777000-21781200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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