Variant report

Variant	rs28750816
Chromosome Location	chr1:92134755-92134756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv2763581	chr1:92068967-92203803	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1014990	chr1:92084142-92206674	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3420020	chr1:92132164-92136662	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3359097	chr1:92133389-92136137	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3522046	chr1:92133464-92135912	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3522047	chr1:92133464-92135912	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv821208	chr1:92133929-92134968	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv2649223	chr1:92133936-92135667	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv13624	chr1:92134113-92134968	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv1960868	chr1:92134125-92134992	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv546808	chr1:92134195-92134883	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv988019	chr1:92134228-92134948	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv546809	chr1:92134246-92134830	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv1589048	chr1:92134341-92134953	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92134000-92138000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:92134200-92138600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:92134200-92145200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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