Variant report

Variant	rs28754621
Chromosome Location	chr14:71151290-71151291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71150935..71153106-chr14:71165634..71167400,2	MCF-7	breast:
2	chr14:71149455..71152082-chr14:71275817..71278072,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259153	Chromatin interaction
ENSG00000006432	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10133045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145030	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10146910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57974328	1.00[EUR][1000 genomes]
rs58095492	1.00[EUR][1000 genomes]
rs58270240	1.00[EUR][1000 genomes]
rs7146255	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527969	chr14:71150421-71155984	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71134600-71158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:71139000-71152200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:71139200-71151800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:71139200-71152200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:71140000-71151400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:71140200-71152600	Weak transcription	Brain Germinal Matrix	brain
8	chr14:71140400-71151800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:71140600-71151400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:71140600-71152200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:71141000-71160800	Weak transcription	Primary T cells from cord blood	blood
12	chr14:71141400-71152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:71142800-71153600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:71143000-71152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:71143000-71152200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
17	chr14:71143200-71152600	Weak transcription	Fetal Brain Female	brain
18	chr14:71143400-71152200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr14:71144400-71152000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:71144600-71152000	Weak transcription	HSMMtube	muscle
21	chr14:71150000-71151400	Enhancers	Liver	Liver
22	chr14:71150400-71151400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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