The 2.0 version of rSNPBase

Variant report

Variant rs28758810
Chromosome Location chr2:189895591-189895592
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189876200-189898600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr2:189877400-189897400 Weak transcription Placenta Amnion Placenta Amnion
3 chr2:189885200-189895600 Weak transcription HSMMtube muscle
4 chr2:189885200-189898800 Weak transcription Colon Smooth Muscle Colon
5 chr2:189885800-189895600 Weak transcription Fetal Muscle Trunk muscle
6 chr2:189886600-189895800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr2:189887200-189895800 Weak transcription Fetal Lung lung
8 chr2:189887600-189897400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr2:189888000-189902600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr2:189888000-189917400 Weak transcription Ovary ovary
11 chr2:189889800-189931000 Weak transcription Esophagus oesophagus
12 chr2:189890400-189895600 Weak transcription NHLF lung
13 chr2:189890400-189895800 Weak transcription Fetal Muscle Leg muscle
14 chr2:189890400-189896200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr2:189890400-189898600 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr2:189890400-189898800 Weak transcription Aorta Aorta
17 chr2:189890400-189899400 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr2:189890400-189902800 Weak transcription Fetal Stomach stomach
19 chr2:189891600-189913600 Weak transcription Fetal Kidney kidney
20 chr2:189892000-189904000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr2:189892600-189897000 Weak transcription HUVEC blood vessel
22 chr2:189892800-189897000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr2:189893200-189896800 Weak transcription Stomach Smooth Muscle stomach
24 chr2:189893200-189932600 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr2:189893600-189916200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr2:189894000-189898600 Weak transcription Liver Liver
27 chr2:189894000-189913800 Weak transcription Rectal Smooth Muscle rectum
28 chr2:189894600-189896600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr2:189894600-189903800 Weak transcription Placenta Placenta
30 chr2:189894600-189932800 Weak transcription Right Ventricle heart
31 chr2:189894800-189898400 Weak transcription Fetal Intestine Large intestine
32 chr2:189895000-189895600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr2:189895000-189902000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr2:189895000-189902000 Strong transcription Muscle Satellite Cultured Cells --
35 chr2:189895000-189902200 Strong transcription Osteobl bone
36 chr2:189895200-189899800 Strong transcription A549 lung
37 chr2:189895200-189900000 Strong transcription Adipose Nuclei Adipose
38 chr2:189895200-189900200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr2:189895200-189901600 Strong transcription NHDF-Ad bronchial
40 chr2:189895200-189902000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr2:189895200-189902000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr2:189895200-189902200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr2:189895200-189909000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr2:189895200-189940800 Strong transcription HSMM muscle
45 chr2:189895400-189895800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr2:189895400-189902200 Strong transcription NH-A brain

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Last update: Aug 31, 2015