Variant report

Variant	rs28760517
Chromosome Location	chr4:15371416-15371417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr4:15371400-15371516	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15366542..15368923-chr4:15369141..15371576,2	K562	blood:

Variant related genes	Relation type
C1QTNF7	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28415562	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15355400-15375400	Weak transcription	Fetal Lung	lung
2	chr4:15355800-15377400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:15355800-15378000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:15357400-15376800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:15365400-15372600	Weak transcription	Aorta	Aorta
6	chr4:15367600-15375200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:15367600-15390600	Weak transcription	Spleen	Spleen
8	chr4:15368600-15375800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:15368600-15376600	Weak transcription	Primary T cells from cord blood	blood
10	chr4:15370400-15371600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:15370400-15371600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:15370400-15372800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr4:15370600-15371600	Enhancers	HSMM	muscle
14	chr4:15370800-15371800	Weak transcription	Fetal Stomach	stomach
15	chr4:15370800-15372000	Weak transcription	Fetal Kidney	kidney
16	chr4:15371000-15372000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:15371000-15372600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:15371000-15376000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:15371000-15378000	Weak transcription	NH-A	brain
20	chr4:15371200-15374800	Weak transcription	NHLF	lung
21	chr4:15371200-15375200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:15371400-15375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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