Variant report

Variant	rs2876142
Chromosome Location	chr6:131622339-131622340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10457568	0.82[CHB][hapmap]
rs12195121	0.91[EUR][1000 genomes]
rs12196463	0.82[CHB][hapmap]
rs12196504	0.82[CHB][hapmap]
rs12210171	0.82[CHB][hapmap]
rs12214638	0.82[CHB][hapmap]
rs12215812	0.82[CHB][hapmap]
rs17652219	0.82[CHB][hapmap]
rs1923620	0.82[CHB][hapmap]
rs2104208	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777486	0.82[CHB][hapmap]
rs3777488	0.82[CHB][hapmap]
rs4404789	0.82[CHB][hapmap]
rs4897506	0.85[EUR][1000 genomes]
rs6923644	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131614800-131624800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:131615000-131622400	Weak transcription	Lung	lung
3	chr6:131615000-131623800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:131615000-131624400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:131615000-131626200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:131616600-131622400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:131617800-131622400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:131618400-131630200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:131619200-131628600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:131619400-131622400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:131619400-131630200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:131620200-131622400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:131622200-131622400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:131622200-131622400	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:131622200-131622600	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:131622200-131622600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr6:131622200-131622600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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