Variant report

Variant	rs28763906
Chromosome Location	chr3:81810645-81810646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17743065..17743898-chr3:81810178..81810844,2	Hela-S3	cervix:
2	chr16:89988947..89989485-chr3:81809961..81810805,2	Hela-S3	cervix:
3	chr3:81797791..81799957-chr3:81809417..81811244,2	MCF-7	breast:
4	chr3:81797341..81800582-chr3:81808703..81810715,3	K562	blood:
5	chr3:81789146..81795604-chr3:81809193..81811958,7	MCF-7	breast:
6	chr12:121733110..121736069-chr3:81809721..81812341,2	MCF-7	breast:
7	chr3:81810601..81811240-chr7:140178748..140179632,2	Hela-S3	cervix:
8	chr3:81776057..81778355-chr3:81808798..81811277,2	K562	blood:
9	chr16:14727335..14728019-chr3:81810506..81811020,2	Hela-S3	cervix:
10	chr3:81717239..81719106-chr3:81808947..81811221,2	MCF-7	breast:
11	chr3:81810402..81811142-chr9:139304574..139305531,2	Hela-S3	cervix:
12	chr3:81789819..81797196-chr3:81807650..81813820,9	K562	blood:
13	chr12:100036795..100037314-chr3:81810283..81810835,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000110931	Chromatin interaction
ENSG00000165688	Chromatin interaction
ENSG00000133606	Chromatin interaction
ENSG00000165689	Chromatin interaction
ENSG00000114480	Chromatin interaction
ENSG00000259006	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59631704	1.00[EUR][1000 genomes]
rs72895828	1.00[EUR][1000 genomes]
rs72895832	1.00[EUR][1000 genomes]
rs72895840	1.00[EUR][1000 genomes]
rs72895845	1.00[EUR][1000 genomes]
rs72912148	1.00[EUR][1000 genomes]
rs73855821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1009607	chr3:81651419-81825151	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv536604	chr3:81651419-81825151	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv834749	chr3:81655377-81818880	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81805600-81811600	Active TSS	Right Ventricle	heart
2	chr3:81806800-81811000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:81807800-81811600	Active TSS	Psoas Muscle	Psoas
4	chr3:81808000-81811400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:81808200-81811000	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr3:81808200-81811400	Active TSS	Right Atrium	heart
7	chr3:81808400-81811400	Active TSS	Left Ventricle	heart
8	chr3:81808800-81811000	Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr3:81808800-81811000	Active TSS	HSMMtube	muscle
10	chr3:81808800-81811200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:81808800-81811400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:81808800-81811400	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr3:81808800-81811400	Active TSS	HSMM	muscle
14	chr3:81809000-81810800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:81809000-81811000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:81809000-81811000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:81809000-81811000	Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr3:81809000-81811000	Active TSS	GM12878-XiMat	blood
19	chr3:81809000-81811000	Active TSS	NHDF-Ad	bronchial
20	chr3:81809000-81811200	Active TSS	K562	blood
21	chr3:81809000-81811200	Active TSS	NHLF	lung
22	chr3:81809000-81811800	Active TSS	Aorta	Aorta
23	chr3:81809200-81811000	Active TSS	HepG2	liver
24	chr3:81809200-81811200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr3:81809400-81811000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr3:81809400-81811200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:81809400-81811400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:81809400-81811400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:81809600-81810800	Active TSS	Placenta	Placenta
30	chr3:81809600-81811000	Active TSS	Liver	Liver
31	chr3:81809600-81811000	Active TSS	Fetal Thymus	thymus
32	chr3:81809600-81811000	Active TSS	Hela-S3	cervix
33	chr3:81809600-81811000	Active TSS	HMEC	breast
34	chr3:81809600-81811200	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr3:81809600-81811200	Active TSS	A549	lung
36	chr3:81809600-81811400	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr3:81809600-81811400	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr3:81809600-81811400	Active TSS	Fetal Brain Female	brain
39	chr3:81809600-81811800	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr3:81809800-81810800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:81809800-81811000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:81809800-81811000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:81809800-81811000	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr3:81809800-81811000	Active TSS	Fetal Heart	heart
45	chr3:81809800-81811000	Active TSS	Fetal Muscle Leg	muscle
46	chr3:81809800-81811000	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr3:81809800-81811000	Active TSS	HUVEC	blood vessel
48	chr3:81809800-81811200	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr3:81809800-81811200	Active TSS	Brain Angular Gyrus	brain
50	chr3:81809800-81811200	Active TSS	Brain Germinal Matrix	brain

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