Variant report

Variant	rs2876568
Chromosome Location	chr6:143919974-143919975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143919523..143922006-chr6:143930988..143932681,2	K562	blood:
2	chr6:143917132..143921023-chr6:143928488..143932681,3	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12194137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12200304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524707	0.86[MEX][hapmap]
rs6915651	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496707	0.82[MEX][hapmap]
rs954349	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:143913200-143928400	Weak transcription	Aorta	Aorta
3	chr6:143917000-143920200	Enhancers	Placenta	Placenta
4	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:143917200-143929000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143918000-143920000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:143918200-143920000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:143918200-143920000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:143918200-143920600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143918200-143929200	Weak transcription	Lung	lung
12	chr6:143918400-143920000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:143918400-143921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:143918400-143921200	Weak transcription	Left Ventricle	heart
15	chr6:143918400-143922800	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:143918600-143920000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:143918600-143920200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:143918600-143920200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:143919000-143920200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:143919000-143920200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:143919000-143920200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:143919200-143920000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:143919200-143920000	Enhancers	Primary T cells from cord blood	blood
24	chr6:143919200-143920200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:143919200-143920400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:143919200-143923400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:143919400-143920000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:143919400-143920000	Enhancers	Fetal Thymus	thymus
29	chr6:143919400-143920000	Enhancers	Small Intestine	intestine
30	chr6:143919400-143920000	Enhancers	K562	blood
31	chr6:143919400-143920200	Enhancers	Adipose Nuclei	Adipose
32	chr6:143919600-143920000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:143919600-143920000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:143919600-143920000	Enhancers	HUVEC	blood vessel
35	chr6:143919600-143920200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:143919600-143922600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:143919800-143920000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr6:143919800-143920000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:143919800-143930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:143919800-143930600	Weak transcription	Stomach Mucosa	stomach

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